FastQCFastQC Report
Tue 18 Jul 2023
SRR10919496.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10919496.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44235030
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC4643661.0497698317374262No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT2931710.6627575475816339No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2712290.6131543258815468No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC2037450.460596500104103No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC1992620.45046199810421744No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT1812270.40969114296972337No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC1670050.3775401531320314No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT1599590.3616116005799024No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG1467520.3317551723147921No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT1346430.3043809397213023No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT1236880.2796154992999892No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC1218680.27550111303191155No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC1079870.24412100545653523No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT1070820.2420751155814747No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC1047210.23673771669195207No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1039760.23505353110419505No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC978130.2211211340876224No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCT976790.22081820674700572No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC949490.21464662734488935No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC938730.21221416601277313No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC908090.20528752891091065No Hit
ACCTCTAGCATTACAAGTATTAGAGGC884360.19992300219984024No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC876050.19804440055765757No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC870140.1967083553464302No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC835800.1889452770801783No Hit
CGGGCGGGCGTCCCGCGCGTGTGGGGGGAAC816990.18469299105256626No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG816050.18448048978377546No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT815700.1844013669709278No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC734860.16612625785491725No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC719620.16268102451835117No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC719340.16261772626807305No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGT718340.16239166108850836No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC708340.16013100929286134No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC706300.15966983632654932No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTCT703350.15900294404683346No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC696250.15739788127192408No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT689950.15597367064066647No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC664510.15022257247254042No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCT660800.1493838706563554No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC635340.14362825118463804No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC630250.14247757942065373No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC627940.14195536885585924No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC611110.13815069188378531No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC605800.13695028578029675No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA596090.1347551928867235No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA590780.13355478678323493No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC582190.13161288689077413No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG567370.12826260092962524No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG564740.12766804950737007No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT558230.12619636518840385No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT557610.12605620477707372No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT551810.12474502673559845No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC551120.12458904176169883No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC549070.12412560814359117No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT542020.12253184862766003No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT538160.12165923703454026No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT535190.12098782345123311No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC533630.12063516177111216No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT524990.11868195861967314No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC521560.11790655505376621No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC515640.11656824919074318No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG512930.11595561255412282No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC508370.1149247553353078No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA498620.11272061983455195No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTATGGGAAC494590.1118095771609062No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC486270.10992871486692787No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC482570.10909227370253846No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG477590.10796646910830625No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT476480.10771553675898943No Hit
CGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC471990.1067005041027439No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC466830.10553400777619006No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC459030.10377069937558536No Hit
CGCGGGGCCTCGCTCCACCCCCCCATCGCCTCT454850.1028257469250049No Hit
GCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC454800.10281444366602667No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAT450730.10189435838519832No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT450520.10184688469748976No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC442670.10007227303790683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)