FastQCFastQC Report
Tue 18 Jul 2023
SRR10919497.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10919497.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43307589
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length1-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC4355331.005673624546497No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2824220.6521305076576764No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT2614690.6037486870950032No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT2207470.5097189778909188No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC1868280.43139783191347825No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT1829190.4223717002578924No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT1300980.3004046242334109No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT1287540.2973012420525188No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG1282940.2962390725560825No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1264760.29204119398103645No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG1258670.29063497393031973No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC1238020.2858667565169698No Hit
ACCTCTAGCATTACAAGTATTAGAGGC1188770.2744946157127334No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC1095210.25289101178086826No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT1063080.245471988754673No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT1026740.23708084973282625No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT984710.22737585322517032No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC973840.22486590052380886No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC969940.22396536551596075No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC964780.22277388842865392No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC964120.22262149019655653No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC959680.22159626572608326No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT876850.20247028759786187No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT846110.19537222448472022No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG804780.1858288624656524No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT759830.17544961923417166No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC755720.17450059387974703No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC735700.16987784750612647No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT732980.16924978206475544No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT732400.16911585634563955No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC691040.15956556713420364No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC686760.15857728768969337No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC675890.15606733498833197No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT646070.14918170577447754No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC633180.14620532212033321No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT619240.14298648673330672No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC594370.13724384426018266No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC590790.13641719930426052No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG580770.13410351705332754No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC579510.1338125749738689No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC578880.13366710393413958No Hit
AAAACGATGCCGACTGGCGATGCGGCGGCGTT536220.12381663638675429No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC535550.12366192909053424No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC531080.12262977742769288No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT525220.12127666585179794No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC520200.12011751566220875No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT516050.1191592540512934No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC511180.11803473982354455No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG503660.11629832360328347No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC497720.11492673951440704No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT492290.11367291769578769No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC491150.1134096843858013No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC489950.11313259669107878No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC472770.10916562452830149No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC470570.10865763042131023No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT470000.10852601376631704No Hit
CCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT466910.10781251295240656No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC464650.10729066446067917No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC462100.10670185310939383No Hit
ACCTCTAGCATTACAAGTATTAGAGGCAC460200.1062631309260832No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC455120.10509012635175788No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGC443690.10245086605952597No Hit
ACCTCTAGCATTACAAGTATTAGAGGCACT433540.10010716597499807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)