FastQCFastQC Report
Tue 18 Jul 2023
SRR10919498.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10919498.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23917619
Total Bases763.8 Mbp
Sequences flagged as poor quality0
Sequence length1-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC3497141.4621605938283406No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC2818971.178616483522043No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT1537320.6427562877391767No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT1535430.6419660753020608No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1429870.5978312473327717No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG1368310.5720928993809961No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG1075430.44963923875532924No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA838230.3504654873881886No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC832340.34800286767675326No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT820950.3432406879631288No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT816370.34132578163403304No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC693330.2898825338759682No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC639030.2671796051270822No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT638550.2669789162541639No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC629150.26304875915951337No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT625290.2614348861397951No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC606760.25368745944151044No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC560260.23424572487754738No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC553450.2313984514930186No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT548350.22926613221826136No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC539110.22540287141458354No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT528850.22111314675595425No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC524340.21922750755415912No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT517460.21635096704232976No Hit
ACCTCTAGCATTACAAGTATTAGAGGC506450.2117476660197656No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT505550.21137137438304374No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC480810.20102753539137821No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC472570.19758237640628024No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT467190.19533298862232065No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC462500.19337209109318115No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC444280.18575427595865626No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT443460.18541143246742076No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT440920.18434945384822796No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT435250.1819788165368802No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC426060.17813646082413134No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC416410.1741017782748358No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC415140.1735707889652394No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT398350.1665508594312837No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC397990.16640034277659493No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC397430.16616620575819024No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG395890.16552232895757726No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC395320.16528401092098674No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT395260.16525892481187193No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC390180.1631349675734863No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC377970.1580299443686263No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC375670.15706831018589268No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC366530.15324685956407283No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC365530.15282875774549298No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC362000.1513528583259061No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG361350.1510810921438292No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC358430.14986023483357602No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG344420.14400262835527233No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA337810.1412389753344595No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC333810.1395665680601401No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC333780.1395540250055827No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT318220.13304836070848022No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG316200.13220379503494892No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC305150.12758376993964157No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC303080.12671829917518126No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC300110.12547653677399911No Hit
TGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC294470.12311844251720876No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC292280.12220279953451887No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC287470.12019172978714979No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC274820.11490274178211468No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT274580.11480239734565552No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT271330.11344356643527101No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC264610.1106339222144144No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT256420.10720966832024542No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC252450.10554980410048341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)