FastQCFastQC Report
Wed 30 Aug 2023
SRR11093243_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11093243_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49087455
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length16-147
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCCAGTAAAACGCGGCGTGTTCGAAT6546071.333552533941717No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATT5831891.1880611858977004No Hit
TTCCCAGTAAAACGCGGCGTGTTCGAATT2753430.5609233560794709No Hit
TTCCCAGTAAAACGCGGCGTGTTCGAAT2440890.4972533206294765No Hit
TCCCAGTAAAACGCGGCGTGTTCGAA1414900.28824065130286347No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATTC1213450.24720165264220767No Hit
CTTCCCAGTAAAACGCGGCGTGTTCGAATT1190790.24258540191175118No Hit
TTCCCAGTAAAACGCGGCGTGTTCGAATTC1147570.23378070832965367No Hit
TCCCAGTAAAACGCGGCGTGTTCGAAC624610.12724432342234893No Hit
GAGAATTTCTGGAAGGGCTCCCTTCGGGGTAAAGCCTA602180.12267492784052464No Hit
CTTCCCAGTAAAACGCGGCGTGTTCGAATTC582530.11867186840303699No Hit
TCCCAGTAAAACGCGGCGTGTTCGAATC562110.11451194607665033No Hit
AGGCCTAGATCGTTTGTACAGACAGACTTTT537610.10952085415713649No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)