FastQCFastQC Report
Wed 30 Aug 2023
SRR11179738_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179738_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149909118
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT6284950.4192506822700405No Hit
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG5682460.37906033174046155No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4793440.31975640067470745No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4198400.28006301791462745No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3990710.26620862381432997No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3967940.26468970353090865No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3939800.26281256621094923No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3623200.24169310368432692No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3550470.23684149752652137No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3533360.2357001393337529No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3481150.23221736252227168No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3466350.2312300976915894No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3423930.22840038322418788No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3392720.22631845515894505No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3242720.21631239268581381No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3192730.21297770559893497No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3187940.21265817867062628No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3136960.20925745157142475No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3098120.20666654846171534No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2848510.1900157934355934No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2750350.18346782615317633No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2647030.17657565032168357No Hit
TATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2637330.17592859161508775No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2511230.1675168284293421No Hit
GGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2410170.16077541060577782No Hit
AATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2404820.16041852771090281No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2375460.15846000774949526No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2264070.151029505756948No Hit
GGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2263800.15101149484449639No Hit
AGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2225000.14842326001811312No Hit
GCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2213660.1476668016951444No Hit
CGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2157370.143911859984394No Hit
AGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2156050.14382380663463046No Hit
AAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2151060.14349093828969095No Hit
CCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2073690.13832981126604987No Hit
TGTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2040040.13608511791791078No Hit
GCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2026110.13515588824957264No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2008730.1339965191443525No Hit
ACTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1983820.13233484570298118No Hit
CCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1964830.13106807819388278No Hit
GAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1946650.12985534342213928No Hit
CGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1935640.12912089843661145No Hit
CATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1908250.12729379142901767No Hit
AATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1906600.12718372474181322No Hit
GGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1898410.12663739373078026No Hit
GTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1847670.12325267633153576No Hit
ATTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1835050.12241083294212965No Hit
CAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1814640.12104934137495224No Hit
TCTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1810490.12077250697986228No Hit
TATTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1782680.11891738299734377No Hit
CGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1713240.11428524314311556No Hit
GATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1671290.1114868810047965No Hit
CTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1626660.10850974388362421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)