FastQCFastQC Report
Fri 1 Sept 2023
SRR11179739_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179739_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences183216386
Total Bases7.8 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG6225220.3397741946509086No Hit
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT5981510.32647243680486093No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG5080340.27728633398543295No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4236490.23122877229987496No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3989760.21776218203539938No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3973280.21686269916927625No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3881830.211871333386087No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3848700.2100630890077703No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3814010.20816969940668953No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3781090.2063729168852834No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3748490.2045936000505981No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3719780.20302660047011298No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3645430.19896855732106844No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3501060.19108880359642066No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3411160.18618203723328547No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3401300.18564387576119964No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3398900.18551288311079336No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3240670.17687664683004936No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2944980.16073780649728567No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2910590.1588607909775057No Hit
ACTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2829240.15442068593144284No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2709430.14788142366261933No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2670050.14573205259053632No Hit
TATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2648470.14455421034229984No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2628390.1434582385005673No Hit
AGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2604870.14217451052658575No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2503130.13662151375477954No Hit
GGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2458210.134169767981342No Hit
CCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2446030.13350498028053015No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2423100.13225345466644015No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2417140.13192815625126456No Hit
GCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2394820.13070992460248618No Hit
AATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2392680.13059312282254057No Hit
AAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2381150.1299638122978804No Hit
GGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2356900.12864024072606692No Hit
AGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2337820.127598849155337No Hit
GCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2269990.12389666937322953No Hit
AATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2231840.12181443203447971No Hit
CGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2193840.11974038173638028No Hit
GGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2182000.1190941513277093No Hit
CCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2153960.11756372052879593No Hit
CGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2138270.11670735607676487No Hit
GAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2085430.11382333455698661No Hit
CGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2046540.11170070781769485No Hit
CAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1950110.10643753228491255No Hit
TGTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1904050.10392356500253204No Hit
CATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1844320.10066348541554575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)