FastQCFastQC Report
Fri 15 Sept 2023
SRR11179740_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179740_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269790688
Total Bases11.8 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG11595850.4298091266960259No Hit
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT10794840.4001190730496969No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG8697330.32237324662591765No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG8193060.3036820900208387No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT7748820.28721599168018724No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG7719540.2861307058900417No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT7463740.2766492815348764No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG7419560.27501171574906247No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG7352000.27250755222507905No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT7205750.26708668314007933No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG7063460.2618125945103042No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT7043790.26108351078447894No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG6730740.24948007100971548No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT6485880.24040414619499398No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG6176680.22894340964058776No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG6171130.22873769460864415No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG6095090.22591921334215956No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG6006030.22261813573046674No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT5929570.21978408683994313No Hit
TATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG5512240.20431542841093164No Hit
ACTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG5472160.20282983228835533No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG5376250.19927485414174118No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT5095170.18885640708251578No Hit
AGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG5093540.18879598987493593No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4973950.18436329425869583No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4832600.17912404745415084No Hit
CCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4738070.17562022007223616No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4608290.17080982424419333No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4555180.1688412611186936No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4552320.1687352530121425No Hit
AATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4536390.16814479527180715No Hit
GGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4450960.1649782664107369No Hit
GCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4438080.16450085927354172No Hit
GCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4401040.16312794309639034No Hit
GGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4380350.16236105228361328No Hit
AGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4356810.16148852402200037No Hit
AAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG4323790.16026461224636485No Hit
AATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4293390.15913781279211536No Hit
GGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4157250.15409167865719664No Hit
CGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4074850.15103745908383615No Hit
CCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3955400.14660995267560903No Hit
CGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3943700.14617628314880907No Hit
CGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3900310.144567999322497No Hit
GAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3779140.14007673978725313No Hit
TGTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3611450.13386118056083537No Hit
CAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3561200.13199862554188674No Hit
CATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3483280.12911046062494194No Hit
ATTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3393780.12579307407377974No Hit
GTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3357250.12443906144010426No Hit
CATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3237000.11998190241466007No Hit
TCTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3144360.11654812934092076No Hit
TATTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3048180.11298314343599583No Hit
GATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3020740.11196605866544956No Hit
CTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2936030.1088262171598747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)