FastQCFastQC Report
Wed 30 Aug 2023
SRR11179741_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179741_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129116115
Total Bases5.7 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG5277900.4087715929185137No Hit
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4926680.38156972117694216No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3789600.2935032548028571No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3593460.2783122772862241No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3297950.255425126445293No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3290630.25485819488915074No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3273900.2535624619746342No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3219010.24931124980022826No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3218260.24925316255062355No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3088300.23918780393911324No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2899800.22458854187178728No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2805610.21729355781809268No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2574260.1993755775566822No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2564860.19864755069496942No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2543220.19697153991970717No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2513600.19467748080865044No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2436330.18869294510603885No Hit
ACTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2392380.1852890322792008No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2389560.18507062422068693No Hit
TATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2355910.18246444295508737No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2354630.1823653073824286No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2264130.17535611259678932No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2228690.17261129642879977No Hit
AGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2209430.17111961585894991No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2206500.1708926883371607No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2060310.15957032164420373No Hit
CCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2017990.1562926517731733No Hit
AATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1967250.15236285571324695No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1962920.15202749865886223No Hit
GGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1940760.15031121405720735No Hit
GCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1926990.14924473215446424No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1885390.14602282604305436No Hit
AATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1868580.14472089715524664No Hit
GGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1851390.1433895373943059No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1847190.14306424879651933No Hit
GCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1826250.14144245278755482No Hit
CGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1812830.14040307826796058No Hit
GGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1795980.1390980513935073No Hit
AGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1788290.13850246346089332No Hit
AAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1777200.13764354666340448No Hit
CGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1713490.13270922843364671No Hit
CGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1619290.12541346988329072No Hit
CCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1618440.125347637667072No Hit
GAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1571840.12173848322496383No Hit
CATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1504610.11653154217039446No Hit
CAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1476570.11435985353183838No Hit
CATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1388230.10751795002506077No Hit
TGTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1333410.10327215932728459No Hit
GATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1327180.10278964790723451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)