FastQCFastQC Report
Sat 26 Aug 2023
SRR11179742_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179742_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151412331
Total Bases6.5 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4313800.28490414033715655No Hit
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG3381470.22332857420971877No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3273510.21619837554710122No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2754240.18190328236872597No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2738230.1808459048160351No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2685200.17734354806280606No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2642980.1745551358033052No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2434490.16078545148347265No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2390140.15785636375943515No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2259590.14923421263490091No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2159370.14261520087158555No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2133110.140880863923824No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2125840.14040071808946655No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2103560.13892923952144956No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2098660.13860561990819623No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2040170.13474265844305638No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1957120.1292576362225082No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1952030.12892146809363894No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1922400.12696456010574197No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1895460.12518531268103916No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1876490.1239324424640157No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1760150.11624878821791602No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1629150.10759691692481771No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1608550.10623639365277324No Hit
AATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1528460.10094686409655763No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1525110.10072561395280283No Hit
GGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1519980.10038680403117234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)