FastQCFastQC Report
Sat 26 Aug 2023
SRR11179743_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179743_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176019532
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4679100.26582845362865754No Hit
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4273960.24281168978451778No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3992500.22682141888662674No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3112470.17682526277822394No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2945450.16733654308318466No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2932260.16658719442567316No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2931000.1665156114606645No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2879210.16357332435129984No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2877180.16345799624100807No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2739780.15565204434244265No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2686100.15260238278556496No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2673510.15188712125424808No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2626200.14919935135380316No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2571290.14607981118822655No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2546950.14469701010226524No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2540570.14433455032706258No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2478970.14083493870441605No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2426420.13784947456853822No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2298270.13056903253213967No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2258230.12829428497741943No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2105990.11964524482430736No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2069310.11756138517627691No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2010120.11419869017717875No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1993130.11323345638710142No Hit
ACTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1944870.11049171520351503No Hit
GCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1890900.10742557820230995No Hit
GGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1886200.10715856238045218No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1857730.105541128242518No Hit
AGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1830080.10397027984371643No Hit
AAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1812690.1029823213028427No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1766600.10036386189232682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)