FastQCFastQC Report
Wed 30 Aug 2023
SRR11179745_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179745_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134846259
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG4321710.32049164967935817No Hit
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT3788890.2809785030817948No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2973030.2204755268739046No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2935500.21769235733858955No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2578020.19118216694465362No Hit
GTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2574740.19093892697460743No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2547410.18891217441931407No Hit
TGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2507220.18593174320097378No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2405810.1784113269319544No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2393710.17751400874977183No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2239160.16605280833189448No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2164670.1605287396219127No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1985170.14721728394408035No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1968640.14599144348528054No Hit
ACTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1968510.1459818028767116No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1932140.14328465723324219No Hit
TCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1929090.14305847372451022No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1859730.13791483826036285No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1853270.1374357741730158No Hit
TATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1813850.13451244502081441No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1798820.13339784235319424No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1769940.13125614408034858No Hit
AGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1752170.1299383470475069No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1728180.1281592839739069No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1725930.12799242728713742No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1639010.12154656808091355No Hit
CCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1631390.12098148010172087No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1505000.11160858381692296No Hit
GCTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1493150.11072980526660366No Hit
GCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1489520.11046060981194888No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1478740.1096611808860044No Hit
AATATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1440200.10680311123796174No Hit
GCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1426620.10579603843514856No Hit
AATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1418050.10516049985487548No Hit
GGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1389130.10301583524093168No Hit
AGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1384740.10269027930541255No Hit
GGTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1363710.10113072547307375No Hit
GGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1357530.10067242577341355No Hit
AAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1351650.10023637363198931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)