FastQCFastQC Report
Wed 30 Aug 2023
SRR11179747_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11179747_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141326950
Total Bases5.9 Gbp
Sequences flagged as poor quality0
Sequence length22-87
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT4127430.29204833189989593No Hit
TTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG3057570.21634727134492043No Hit
ATTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2777360.19652019660793643No Hit
CTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2453330.1735925101334176No Hit
TCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2430880.17200399499175495No Hit
GTTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2377280.1682113708673399No Hit
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG2367690.16753280248388577No Hit
TTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2361420.16708915037082453No Hit
TGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT2318210.16403170096007874No Hit
TCATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2170230.15356094502853138No Hit
ATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2085360.14755572097183162No Hit
TGATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG2056480.1455122324510647No Hit
GTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1864750.13194581783587633No Hit
ACTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1815510.12846169821113385No Hit
CTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1755680.1242282522901683No Hit
ACATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1711290.12108730854235517No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1650940.11681706850674978No Hit
ATTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1587940.11235932000230671No Hit
AGTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1585310.1121732266917244No Hit
TAATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1581930.1119340649465654No Hit
TATATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1577220.11160079517742369No Hit
CCTATACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTT1559010.11031229358590136No Hit
TGTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1446360.10234141471248052No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG1434790.10152274566174392No Hit
GTTTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATCGTTTATTTG1429810.1011703712561546No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)