FastQCFastQC Report
Fri 29 Sept 2023
SRR11215525_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11215525_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19426023
Total Bases612.8 Mbp
Sequences flagged as poor quality0
Sequence length20-50
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGCTTACGGGTTCAAGTCCCGTCCTCGGTACCA1182330.6086320396099603No Hit
ATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA1020560.5253571459273986No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGC602130.30996051018780324No Hit
CGGTGGTTCAAGTCCACTCAGGCCT595170.3063776872909087No Hit
TAGGGCTTACGGGTTCAAGTCCCGTCCTCGGTACCA554390.28538522784617315No Hit
AGCTCAGTAGGTAGAGCAACTGA545820.2809736197676694No Hit
ATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA510320.26269916389988834No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGA505110.2600171944612647No Hit
TCCTCTGCAGTTCAGTCGGTAGAACGGCGGA468360.2410992718375758No Hit
GCGGGAATAGCTCAGTTGGTAGAGCACGACC461820.2377326537706663No Hit
TTCGCGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCA421790.21712627437947543No Hit
CGGTGGTTCGAGTCCACTCGGACGCACCA409290.2106916068203976No Hit
CACAGGTTCGAATCCCGTCGTAGCCACCA345360.17778214305624987No Hit
CGGTGGTTCAAGTCCACTCAGGCCTACCA344810.17749901768365045No Hit
GCATCCGCAGCTCAGCTGGATAGAGTACTCGGC312410.16082035937052067No Hit
GGGTCGTTAGCTCAGTTGGTAGAGCAGTTGAC310000.15957975546513045No Hit
TGCTCCTGATGGAAGTCATATTGGTGGAT295200.1519611090751823No Hit
TCCTCTGCAGTTCAGTCGGTAGAACGGCGGAC293010.15083375531883186No Hit
ATTAAAGATAAATAACAGTTTACATCTC290890.14974243570081225No Hit
CAGTTCAGTCGGTAGAACGGCGGAC288190.14835254750805146No Hit
AGCTCAGTAGGTAGAGCAACTGAC271460.13974038844698167No Hit
TGGGGCTGATTCTGGATTCGACGGGATTTGCG270450.13922046730820817No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGC270260.13912266036131019No Hit
AGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGC261870.13480371149565715No Hit
GCCGACTTAGCTCAGTAGGTAGAGCAA258050.13283727708960294No Hit
CGGCACGTAGCGCAGCCTGGTAGCGCACCG257550.13257989038723983No Hit
AGGCTTGTAGCTCAGGTGGTTAGAGCGCACCCC244650.12593931346627152No Hit
GCCGATACAGCTCAGTTGGTAGAGCAGCGCA238220.12262932047388186No Hit
TCCTCTGTAGTTCAGTCGGTAGAACGGCGGAC234650.12079157941900923No Hit
GCGAAGGTGGCGGAATTGGTAGACGCG226830.11676605139405014No Hit
AGCTCAGCTGGGAGAGCACCTCCCTT226790.11674546045786108No Hit
CGGAGGTTCGAATCCTCCCGGATGC225430.1160453686274334No Hit
GGGGGCTGATTCTGGATTCGACGGGATTTGCG219160.11281773937979998No Hit
CGCAGGTTCGAATCCTGCACGACCCACCA218580.11251917080505876No Hit
TGCCGATACAGCTCAGTTGGTAGAGCAGCGCA207470.10680003827855038No Hit
GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCT204090.10506010417057574No Hit
TTAGGGCTTACGGGTTCAAGTCCCGTCCTCGGTACCA198960.10241931660433018No Hit
TGGGGCTACAGCTCAGCTGGGAGAGCGCCTGC197990.10191998640174574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)