FastQCFastQC Report
Fri 1 Sept 2023
SRR11273546_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11273546_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60250651
Total Bases3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT1879160.3118904059642442No Hit
CCGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT791060.13129484692206894No Hit
CCGACGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT753460.1250542504511694No Hit
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCGTCTGGAATTCT694610.11528672113434923No Hit
CCGGCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT646990.10738307209327913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)