FastQCFastQC Report
Fri 1 Sept 2023
SRR11273550_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11273550_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66897054
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT1552950.23214026734271437No Hit
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCGTCTGGAATTCT971920.14528591946664796No Hit
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCGTTTGGAATTCT740930.11075674573053697No Hit
CCGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT732080.1094338175190794No Hit
CCGACGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT717420.10724239067388527No Hit
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGTCTGGAATTCT680400.10170851469782213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)