FastQCFastQC Report
Thu 31 Aug 2023
SRR11273552_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11273552_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51296775
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT1227460.23928599799889955No Hit
CCGTCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATCGTCTGGAATTCT775380.151155701308708No Hit
CCGCCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT575520.1121941876462994No Hit
CCGACGACGAAGCCGAGCGCACGGGGTCGGCGGCGATGTCGTGGAATTCT564240.10999521899768552No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)