FastQCFastQC Report
Wed 30 Aug 2023
SRR11294609_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11294609_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76421498
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length18-50
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC22215102.90691763199931No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGCC15493842.027419038553785No Hit
TCGCTGCGATCTATTGAAA13018551.7035193421620707No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGCC12914111.6898530306223518No Hit
TCGCTGCGATCTATTGAA10346831.3539161454280837No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGC10036141.313261354808826No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC9343621.2226428746528888No Hit
ATCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGCC7438840.9733962555928961No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCC7436950.9731489429846036No Hit
TTCTGGGCTGTAGTGCGC6979160.9132456419527396No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCACCTGGGGTGCC5874050.768638426846854No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC5311870.6950753569368662No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT4964340.6495999332543835No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCACCTGGGGTGCC4945600.6471477436885626No Hit
ATCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGCC4942780.6467787375746024No Hit
ATCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGC4352860.5695857990116865No Hit
ATCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGC4326220.5660998689138493No Hit
TCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGCC3671260.4803962361481059No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGC3427130.4484510366441652No Hit
TTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGCC3425260.4482063411005107No Hit
TGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCCACC3377220.44192015183999667No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGC3365150.440340753330954No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAAC3333130.43615083284549067No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG3276110.4286895815625074No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT3252280.42557134904631155No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACA3193230.41784446570256967No Hit
AGCTGGGGATTGTGGGTTCGGGTCCCATCTGGGTCGCC3094320.40490177253526227No Hit
TTCTGGGCTGTAGTGCGCTATGCCG3068920.4015781004449821No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTC3033700.39696944961743624No Hit
ACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC3011300.3940383372228584No Hit
AGCTGGGGATTGTGGGTTCGGGTCCCATCTGGGTCGC2971800.38886963456277707No Hit
GGGGGTGTAGCTCAGTGGTAGAGCGTGC2911560.3809870358730733No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2882330.37716219590461314No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT2841640.37183777789856987No Hit
TTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGCC2816020.36848531809727153No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGC2737640.3582290417808874No Hit
AACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC2695800.3527541425581582No Hit
AGCCAGGGATTGTGGGTTCGAGTCCCATCTGGGGTGCC2684950.35133438499203457No Hit
AGCTGGGGATTGTGGGTTCGTGTCCCATCTGGGTCGCC2599750.340185689634087No Hit
TCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGC2556530.3345302129513347No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGTT2508790.32828327966039084No Hit
AGCTGGGGATTGTGGGTTCGTGTCCCATCTGGGTCGC2484350.32508522667273543No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC2480730.3246115379732546No Hit
ATCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGCC2437740.3189861575338395No Hit
ATCAGAAGATTCCAGGTTCGTCTCCTGGCTGGCTCGCC2407970.3150906568201529No Hit
ATCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGCC2407000.3149637291852091No Hit
TGCACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACC2385270.31212028845600487No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCT2371480.31031582238809297No Hit
TTCTGGGCTGTAGTGCGCTATGCC2357450.3084799515445248No Hit
ATCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGC2338190.3059597182981155No Hit
ATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGCC2336800.30577783230577343No Hit
TCTCGGCGCCCCCTCGATGCTC2311950.30252612949303875No Hit
TCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGC2281770.29857697895427276No Hit
ATCTCAGGGTCGTGGGTTCGTGCCCCACGTTGGGCGCC2279290.2982524629391588No Hit
GGGGATGTAGCTCAGTGGTAGAGCCATGC2249570.29436350488706725No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2208420.2889788943943496No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACC2204530.28846987532225554No Hit
AACAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC2184360.2858305656348165No Hit
TGGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT2107250.27574047292294634No Hit
TCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGCC2087200.2731168656233354No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTT2072120.2711435988862715No Hit
ATCTCAGGGTCGTGGGTTCGGGCCCCACGTTGGGCGCC2028440.26542792971684487No Hit
TCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCC1905990.24940495147059275No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC1888790.2471542758818991No Hit
ACAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC1879470.2459347237605837No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1872790.24506062417148639No Hit
TCGCTGCGATCTATTGAAAGT1785570.23364760528509923No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGC1713440.22420916166809501No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1711200.22391605042863721No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCACCTGGGGTACC1639050.214474989746995No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1592390.208369377946504No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG1559710.20409309432798609No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGT1505930.19705580751636143No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTG1489680.19492944249797356No Hit
ATCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGCC1488930.19483130257404796No Hit
TCAGAAGATTCCAGGTTCGTCTCCTGGCTGGCTCGCC1470740.1924510822857725No Hit
TTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGC1470400.19240659218692627No Hit
CAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC1464460.19162932398943552No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG1463340.19148276836970665No Hit
TTCTGGGCTGTAGTGCGCT1438250.18819966078131575No Hit
ATTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGCC1437410.18808974406651907No Hit
TCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGCC1416130.18530518729167023No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTC1408390.18429238327675806No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCACCTGGGGTACC1358670.17778636058665062No Hit
ATCAGAAGATTCTAGGTTCGTCTCCTGGCTGGCTCGCC1350740.17674869445767732No Hit
TCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGCC1273850.16668738945682535No Hit
GGGGATGTAGCTCAGTGGTAGAGCTCATGC1260490.16493919027863074No Hit
ATCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGC1248070.1633139931384229No Hit
CAGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGCC1236980.16186283079664313No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGGC1231940.16120333050786312No Hit
CCAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC1229010.16081993053839377No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTG1225980.1604234452457344No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGGCACC1207570.1580144372464408No Hit
ATCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGCC1200680.1571128584786443No Hit
ATCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGC1188520.15552168317873066No Hit
TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGCC1185670.15514875146781343No Hit
TTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGC1185600.15513959174158037No Hit
CAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC1156460.15132652856399126No Hit
ATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGC1154350.15105042824468057No Hit
AGCCAGGGATTGTGGGTTCGAGTCCCACCTGGGGTGCC1154110.15101902346902438No Hit
ATTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGCC1131820.14810230492995569No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGC1119960.14655038559961228No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCC1113900.14575741501429348No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACC1113190.1456645092196439No Hit
TCAGAAGATTCTAGGTTCGTCTCCTGGCTGGCTCGCC1107760.14495397617042263No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGG1096510.14348187731153872No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG1070230.14004305437718584No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCG1054280.13795594532836822No Hit
ACCGAAAGGTTGGTGGTTCGTGCCCACCCAGGGACGC1050740.13749272488743938No Hit
CAGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGCC1026410.1343090657552931No Hit
TCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGCC1007860.1318817383035334No Hit
ATCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGC999760.13082182712513696No Hit
TGGGCGCGCGCCGCGGCTGGACG997560.1305339500149552No Hit
TCGCTGCGATCTATTGAAAG941890.12324935059503807No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCCA939610.12295100522630426No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCC931110.12183875275514752No Hit
ATCGGTCGTCCGACCTGGGTATAGGGGCG924940.12103138831431962No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCC924740.12100521766793945No Hit
ATCTGAGGGTCCAGGGTTCATGTCCCTGTTCGGGCGCC919980.12038235628409168No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC907690.11877417006403095No Hit
TCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGC896750.11734263570703626No Hit
TCCCTGGTCTAGTGGTTAGGATTCGGCGC889520.11639656684039351No Hit
AACCAGGGGTCGCGAGTTCATTTCTCGCTGGGGCC882760.11551199899274417No Hit
TCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGC872120.11411972060531973No Hit
AGTGTAGTATCTGTTCTTATCAGTTTAATATCTGAT864920.11317757733563401No Hit
TGTATGAGGTCCCGGGTTCGATCCCCGGCATCTCCACC842330.11022160282699509No Hit
TCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGCC833260.1090347640136549No Hit
AGCCAGGGATTGTGGGTTCGTCCCATCTGGGGTGCC820760.107399098614895No Hit
ATTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGC820190.10732451227271153No Hit
GGGGGTGTAGCTCAGTGGTAGAGCATGC794950.10402177669953552No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC786450.10290952422837878No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCG783100.10247116590151112No Hit
TTCAAAGGTTCCGGGTTCGAGTCCCGGCGGAGTCGCC782730.10242275020570782No Hit
TCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGC776780.1016441734758981No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC774980.10140863765847669No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAG774200.10130657213759406No Hit
GGTTCCATGGTGTAATGGTTAGCACTCTGG766550.10030554491355298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)