FastQCFastQC Report
Wed 30 Aug 2023
SRR11294610_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11294610_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65451634
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length18-50
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC22739903.474305927946734No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGCC14483432.2128446785606606No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGCC11661141.7816423039950384No Hit
TTCTGGGCTGTAGTGCGC11131831.7007719012790423No Hit
TTCTGGGCTGTAGTGCGCTATGCCG9116541.3928666777058614No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGC8725401.3331065195408263No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC8389251.281747985084681No Hit
TCGCTGCGATCTATTGAAA7873961.203019622092246No Hit
ATCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGCC6567461.0034065765264164No Hit
TCGCTGCGATCTATTGAA6042800.9232466220782203No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCC5857620.8949539747166587No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCACCTGGGGTGCC5469100.8355941121347712No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT5445720.8320220088011859No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC5177250.791003934294444No Hit
TTCTGGGCTGTAGTGCGCTATGCC5106100.7801333118742306No Hit
ATCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGCC4611710.704598146472554No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCACCTGGGGTGCC4434680.6775506933868145No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG3641240.5563253012140231No Hit
ATCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGC3441320.5257806092358214No Hit
ATCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGC3420880.5226576925489744No Hit
TCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGCC3231620.4937416841266331No Hit
TTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGCC3208780.490252084462857No Hit
TGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCCACC3150030.48127599075677774No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAAC3045920.46536958878673673No Hit
ATCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGCC2934150.4482928569819968No Hit
GGGGGTGTAGCTCAGTGGTAGAGCGTGC2932830.44809118134468573No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT2902150.4434037506229409No Hit
AGCTGGGGATTGTGGGTTCGGGTCCCATCTGGGTCGCC2890030.44155200158944846No Hit
ATCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGCC2851330.43563923858646525No Hit
TGCACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACC2644810.40408616842170814No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGC2497640.38160086270726257No Hit
TTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGCC2488800.3802502470755734No Hit
AGCCAGGGATTGTGGGTTCGAGTCCCATCTGGGGTGCC2463560.37639396443486806No Hit
TTCTGGGCTGTAGTGCGCT2402400.3670496599061224No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACC2395830.3660458652567788No Hit
AGCTGGGGATTGTGGGTTCGTGTCCCATCTGGGTCGCC2343240.3580109245248178No Hit
ACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC2327490.35560456748872No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCT2276920.3478782515956744No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGC2246580.3432427676289945No Hit
AGCTGGGGATTGTGGGTTCGGGTCCCATCTGGGTCGC2209740.3376141839331315No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2197790.3357884082771715No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC2170380.33160058311149265No Hit
ATCAGAAGATTCCAGGTTCGTCTCCTGGCTGGCTCGCC2083640.31834804918697673No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC2075770.31714563459179645No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTC2071230.3164519926271054No Hit
AACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC2046550.31268126934768353No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGC1979930.302502761046424No Hit
TCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGCC1974730.3017082812630774No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACA1973350.30149743855134314No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT1968880.3008144915068125No Hit
TCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGC1968320.30072893214552904No Hit
GGGGATGTAGCTCAGTGGTAGAGCCATGC1962540.29984583730942455No Hit
TGGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT1883160.28771779784749146No Hit
ATCTCAGGGTCGTGGGTTCGTGCCCCACGTTGGGCGCC1875990.28662233245391555No Hit
ATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGCC1865650.2850425399616456No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC1862140.28450626610788665No Hit
AACAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC1785540.2728029677608965No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGTT1785160.2727449096228828No Hit
AGCTGGGGATTGTGGGTTCGTGTCCCATCTGGGTCGC1779450.2718725097069387No Hit
TCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGC1775790.27131331816712173No Hit
ATCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGC1760120.2689191838969215No Hit
ATCTCAGGGTCGTGGGTTCGGGCCCCACGTTGGGCGCC1725530.26363436549192953No Hit
TCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGCC1652720.2525101206793401No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTT1560460.23841421590788703No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCACCTGGGGTACC1555740.2376930727199263No Hit
ACAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC1554040.23743333894460142No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGC1523270.23273215761122176No Hit
TCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCC1511780.23097666285917326No Hit
TCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGCC1501580.22941826020722417No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1484030.22673689093842944No Hit
ATTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGCC1468480.2243610908170757No Hit
TCTCGGCGCCCCCTCGATGCTC1467780.22425414161547133No Hit
ATCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGCC1440450.22007853921569018No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG1395040.2131405917230424No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGT1376030.21023615697661574No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1363280.20828815366167938No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG1311240.2003372444452647No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTG1304720.1993410890246071No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACC1302780.19904468695158933No Hit
TCAGAAGATTCCAGGTTCGTCTCCTGGCTGGCTCGCC1270310.19408377184288478No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCACCTGGGGTACC1255460.1918149209231354No Hit
ATCAGAAGATTCTAGGTTCGTCTCCTGGCTGGCTCGCC1245260.1902565182711863No Hit
CAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC1173580.1793049200269011No Hit
CAGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGCC1161740.17749595067405038No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGGC1132460.17302241835551424No Hit
ATCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGCC1132280.17299491713224455No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTG1117010.17066189669153256No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCC1109440.1695053174684684No Hit
GGGGATGTAGCTCAGTGGTAGAGCTCATGC1106190.16900876760387679No Hit
ATTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGCC1104150.16869708707348696No Hit
ATCGGTCGTCCGACCTGGGTATAGGGGCG1078970.16484997150720485No Hit
TCGCTGCGATCTATTGAAAGT1041550.15913277275858384No Hit
AGCCAGGGATTGTGGGTTCGAGTCCCACCTGGGGTGCC1037810.15856135845286917No Hit
TCAGAAGATTCTAGGTTCGTCTCCTGGCTGGCTCGCC1024970.156599604526298No Hit
ATCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGC1013900.1549082792952121No Hit
CAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC1009070.15417032980414208No Hit
TTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGC981600.14997333756404002No Hit
TCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGCC977770.14938817264669055No Hit
CCAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC970530.14828201233295413No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGC957800.1463370647094922No Hit
TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGCC937470.1432309543257545No Hit
ATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGC925360.14138073313799926No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTC922410.1409300186455238No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGGCACC919530.14048999907320878No Hit
CAGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGCC915750.1399124733845453No Hit
ATCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGC898660.137301385019662No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCG892480.13635717635406933No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC865810.13228241177294367No Hit
ATACCGGGTGCTGTAGGCTT864080.13201809446040721No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC854850.13060789284496702No Hit
TACCGGGTGCTGTAGGCTT854450.13054677901547881No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC851740.1301327328206963No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTT849230.12974924354065784No Hit
ATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGCC825770.12616491744117497No Hit
ACCGAAAGGTTGGTGGTTCGTGCCCACCCAGGGACGC815070.12453012250236564No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCC800230.12226279942835347No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCC796160.12164096621331104No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCCA791830.12097940900910129No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAG790130.12071967523377644No Hit
TCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGCC779960.11916585611903899No Hit
AACCAGGGGTCGCGAGTTCATTTCTCGCTGGGGCC765610.11697339748614985No Hit
TGTATGAGGTCCCGGGTTCGATCCCCGGCATCTCCACC758870.1159436294592737No Hit
TTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGC757980.11580765118866246No Hit
AGACCGCCTGGGAATACCGGGTGCTGTAGGCTT756670.11560750339708861No Hit
TGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCC731620.11178024982539014No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGG721660.110258515471134No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG718870.10983224651045381No Hit
TTCAAAGGTTCCGGGTTCGAGTCCCGGCGGAGTCGCC717410.10960918103282188No Hit
TCCCTGGTCTAGTGGTTAGGATTCGGCGC715630.1093372244915994No Hit
TTCTGGGCTGTAGTGCGCTATGC714110.10910499193954423No Hit
GGGGGTGTAGCTCAGTGGTAGAGCATGC707200.1080492505351356No Hit
ATCTGAGGGTCCAGGGTTCATGTCCCTGTTCGGGCGCC706920.10800647085449386No Hit
ATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGCC705130.10773298646753418No Hit
TCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGC696820.10646334665991686No Hit
ATCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGC696050.10634570253815208No Hit
AGCCAGGGATTGTGGGTTCGTCCCATCTGGGGTGCC693280.10592248926894628No Hit
TGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCCAC683570.10443895105812027No Hit
GGTTCCATGGTGTAATGGTTAGCACTCTGG680590.10398365302843318No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC672050.10267887276886013No Hit
CGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAACC671980.10266817784869971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)