FastQCFastQC Report
Wed 30 Aug 2023
SRR11294611_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11294611_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96373852
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length18-50
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC31506493.269194843431183No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGCC20825652.160923276160011No Hit
TTCTGGGCTGTAGTGCGC17585081.8246733564203703No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGCC16791891.7423699117059261No Hit
TTCTGGGCTGTAGTGCGCTATGCCG14255541.4791916795024442No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGC13547661.4057402209055627No Hit
TCGCTGCGATCTATTGAAA12509251.2979921151226788No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC11699841.2140056412812057No Hit
ATCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGCC10138371.0519834778421018No Hit
TCGCTGCGATCTATTGAA9652591.0015776893508417No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCC8480790.8799886923685483No Hit
TTCTGGGCTGTAGTGCGCTATGCC7881650.8178203772533653No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCACCTGGGGTGCC7778040.8070695358321882No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT7707710.7997719132363829No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC7522000.7805021635951627No Hit
ATCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGCC7121120.7389058185616572No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCACCTGGGGTGCC6324340.6562298661674331No Hit
TCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGCC5092390.5283995497035856No Hit
ATCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGC4984890.5172450718271591No Hit
ATCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGC4965690.5152528301971369No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG4910280.5095033453679947No Hit
GGGGGTGTAGCTCAGTGGTAGAGCGTGC4561300.47329227849064287No Hit
TTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGCC4485750.4654530152016752No Hit
ATCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGCC4256060.4416197870766855No Hit
AGCTGGGGATTGTGGGTTCGGGTCCCATCTGGGTCGCC4212580.4371081898853643No Hit
ATCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGCC4168190.43250216874178693No Hit
TGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCCACC4144250.430018092459353No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT4028380.41799512174733866No Hit
GGCTGGTCCGATGGTAGTGGGTTATCAGAAC4017760.4168931630957326No Hit
TTCTGGGCTGTAGTGCGCT3840310.39848049240576167No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGC3836680.3981038342225856No Hit
ACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC3602820.3738379161185754No Hit
TTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGCC3567740.370197924640389No Hit
TGCACGAGGCCCCGGGTTCAATCCCCGGCACCTCCACC3566960.3701169898241693No Hit
AGCCAGGGATTGTGGGTTCGAGTCCCATCTGGGGTGCC3527870.36606091038054595No Hit
AGCTGGGGATTGTGGGTTCGTGTCCCATCTGGGTCGCC3412820.3541230249881472No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACC3324230.3449306975921228No Hit
AGCTGGGGATTGTGGGTTCGGGTCCCATCTGGGTCGC3297370.34214363456178964No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGC3284320.3407895328288839No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC3223010.33442784874884945No Hit
ATCAGAAGATTCCAGGTTCGTCTCCTGGCTGGCTCGCC3218020.33391007345021345No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC3187580.33075154036594906No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACA3183050.3302814958563657No Hit
TCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGCC3129750.32475095008135607No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCT3053700.31685980549994No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGC3046330.3160950752492492No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC3014720.31281513994065524No Hit
AACAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC3006300.31194145897582265No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTC2984630.30969292376110485No Hit
GGGGATGTAGCTCAGTGGTAGAGCCATGC2936760.3047258088220859No Hit
TCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGC2927760.303791945558013No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2860530.2968159869753883No Hit
ATCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGCC2768930.287311334198824No Hit
AACAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC2732220.2835022097072554No Hit
ATCTCAGGGTCGTGGGTTCGTGCCCCACGTTGGGCGCC2712940.2815016670704415No Hit
ATCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGC2699010.2800562542628264No Hit
AGCTGGGGATTGTGGGTTCGTGTCCCATCTGGGTCGC2650060.2749770757321187No Hit
TCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGC2630140.2729101250409707No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCT2628750.27276589504796384No Hit
TGGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTT2572870.26696764180392No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGTT2551790.26478032651429145No Hit
ACAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC2543270.2638962692909691No Hit
ATCTCAGGGTCGTGGGTTCGGGCCCCACGTTGGGCGCC2540200.2635777181553353No Hit
TCAGAAGATTGAGGGTTCGTGTCCCTTCGTGGTCGCC2467930.2560787961448298No Hit
AGCCAGGGATTGTGGGTTCGGGTCCCACCTGGGGTACC2406110.2496641931464979No Hit
ATTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGCC2398610.24888597375977042No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTT2280780.23665962838135807No Hit
TCTCGGCGCCCCCTCGATGCTC2266660.23519450068261255No Hit
TCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCC2265670.23509177572356454No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGC2250610.23352911119501585No Hit
TCAGAAGATTGAGGGTTCGGGTCCCTTCGTGGTCGCC2231160.2315109289187694No Hit
ATCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGCC2098650.21776134879406914No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC2094090.2172881914069389No Hit
TCAGAAGATTCCAGGTTCGTCTCCTGGCTGGCTCGCC1995960.20710596895099723No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG1992610.20675836429159228No Hit
CGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1975130.2049445943075929No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG1936080.20089266536736541No Hit
AGCCAGGGATTGTGGGTTCGTGTCCCACCTGGGGTACC1934750.20075466112945245No Hit
ATCAGAAGATTCTAGGTTCGTCTCCTGGCTGGCTCGCC1894410.1965688784547078No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTG1842380.1911701111625174No Hit
ATTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGCC1800420.18681623310023968No Hit
CAGCCAGGGATTGTGGGTTCGGGTCCCATCTGGGGTGCC1793840.18613347529161747No Hit
TCGCTGCGATCTATTGAAAGT1786360.185357331156588No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGT1779050.184598826660991No Hit
CAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC1773220.18399389079104153No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCACC1696140.1759958707471815No Hit
GGGGATGTAGCTCAGTGGTAGAGCTCATGC1653900.17161293916113263No Hit
ATCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGCC1647870.17098725077420376No Hit
TCAGAAGATTCTAGGTTCGTCTCCTGGCTGGCTCGCC1611290.16719161541867186No Hit
CAGGAGATCCTGGGTTCGTATCCCAGCGGTGCC1571620.16307535367580825No Hit
ATCAGAAGATTCTAGGTTCGGCTCCTGGCTGGCTCGC1563380.16222034997625706No Hit
CCAGGAGATCCTGGGTTCGAATCCCAGCGGTGCC1561420.16201697530985895No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGTTG1553910.16123771829728253No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGGC1553060.1611495201001201No Hit
GCATTGTGGTTCAGTGGTAGAATTCTCGCC1523690.1581020129816955No Hit
ATCGGTCGTCCGACCTGGGTATAGGGGCG1510100.1566918794529454No Hit
AGCCAGGGATTGTGGGTTCGAGTCCCACCTGGGGTGCC1478630.1534264709062371No Hit
TCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGCC1469840.15251439778499254No Hit
CAGCCAGGGATTGTGGGTTCGTGTCCCATCTGGGGTGCC1424520.14781187743746094No Hit
TCAGAAGATTCCAGGTTCGACTCCTGGCTGGCTCGCC1416980.14702950754733765No Hit
ACCGAAAGGTTGGTGGTTCGTGCCCACCCAGGGACGC1366590.1418009108943783No Hit
TTCAAAGGTTCCGGGTTCGGGTCCCGGCGGAGTCGC1366020.141741766220987No Hit
ATACCGGGTGCTGTAGGCTT1354580.14055472224976542No Hit
TACCGGGTGCTGTAGGCTT1343810.13943719921042483No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTTT1337280.13875962953104748No Hit
ATCAGAAGATTGCAGGTTCGGGTCCTGCCGCGGTCGC1327390.13773341756641624No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTC1327190.13771266504943686No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGC1326870.1376794610222698No Hit
ATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGC1324840.13746882297492893No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGGCACC1323800.13736090988663607No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC1286330.13347292583054582No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCG1282870.13311390728680222No Hit
GCGTTGGTGGTATAGTGGTGAGCATAGCTGCC1256490.13037665029721962No Hit
AGACCGCCTGGGAATACCGGGTGCTGTAGGCTT1235540.12820282414362769No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAG1199360.12444869382205455No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCC1185050.12296385123217862No Hit
ATCAGAAGATTGAGGGTTCGAGTCCCTTCGTGGTCGCC1176910.12211922379111712No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC1175620.12198537005660001No Hit
TCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGCC1173630.12177888251265498No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCCA1166010.12098821161573993No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1115270.11572329805806661No Hit
TTCTGGGCTGTAGTGCGCTATGC1109910.11516713060301875No Hit
AACCAGGGGTCGCGAGTTCATTTCTCGCTGGGGCC1091350.11324129702733061No Hit
TCAGAAGATTCCAGGTTCGGCTCCTGGCTGGCTCGC1089810.11308150264658925No Hit
GGTTCCATGGTGTAATGGTTAGCACTCTGG1081920.11226281585175199No Hit
GGGGGTGTAGCTCAGTGGTAGAGCATGC1078520.11191002306310222No Hit
TTCAAAGGTTCCGGGTTCGTGTCCCGGCGGAGTCGC1076510.11170146026745927No Hit
ATCAGAAGATTCTAGGTTCGACTCCTGGCTGGCTCGCC1052790.10924021175370265No Hit
TGTATGAGGTCCCGGGTTCGATCCCCGGCATCTCCACC1050980.10905240147503911No Hit
ATCAGAAGATTGCAGGTTCGTGTCCTGCCGCGGTCGC1049760.10892581112146478No Hit
ATCTAAAGGTCCCTGGTTCGTTCCCGGGTTTCGG1026730.10653615879128708No Hit
ATCTGAGGGTCCAGGGTTCATGTCCCTGTTCGGGCGCC1025890.10644899821997361No Hit
TCCCTGGTCTAGTGGTTAGGATTCGGCGC1014930.10531176028950259No Hit
TTCAAAGGTTCCGGGTTCGAGTCCCGGCGGAGTCGCC1007730.10456466967824427No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG992220.10295531198649194No Hit
ACCGCGGTTCTATTTTGTTGGTTTTCGGAACTG991060.10283494738801142No Hit
TCGCTGCGATCTATTGAAAG987500.10246555258577814No Hit
AGCCAGGGATTGTGGGTTCGTCCCATCTGGGGTGCC982550.10195192779053804No Hit
TGTATGAGGCCCCGGGTTCGATCCCCGGCATCTCC979210.1016053607569821No Hit
AATGGATTTTTGGAGCAGGGAG978010.1014808456551057No Hit
TCCGGTGAGCTCTCGCTGGCCC975350.10120483717927971No Hit
GCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC966530.10028965118048824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)