FastQCFastQC Report
Tue 18 Jul 2023
SRR11453100_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11453100_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43071243
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length61-75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC6773351.5725921817487367No Hit
TCATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC4731271.0984753795008888No Hit
ATATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC4710481.0936484930328108No Hit
TGATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC4235480.9833660941709994No Hit
CTATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC4001980.9291535886252459No Hit
GTATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC3957060.9187243562949878No Hit
GCATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC3076090.7141864932943773No Hit
TAATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC3040180.7058491439404245No Hit
ACATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC2977040.6911897109632986No Hit
AGATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC2879480.6685388671044391No Hit
CCATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC2716880.6307874606730064No Hit
GGATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC2476390.5749520625629495No Hit
AAATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC2227030.5170572857625679No Hit
CGATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC2129620.49444126792440146No Hit
TTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC2075360.4818435353723133No Hit
TTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1800490.41802601331937417No Hit
CAATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC1741960.40443690004488614No Hit
ATACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1473820.3421819054537154No Hit
GAATGTACACGGAGTCGAGCACCCGCAACGCGATGTACACGGAGTCGAGC1455540.3379377743985703No Hit
ATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1435120.33319679211486886No Hit
TTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1376020.31947533996174665No Hit
ACGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1370880.3182819683193262No Hit
TGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1285560.298472927749032No Hit
CTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1274760.2959654542591213No Hit
TCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1247880.28972463135089926No Hit
CTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1244560.288953815426223No Hit
ACGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT1226140.28467718008509757No Hit
GTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1188700.275984605320074No Hit
TTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC1112470.25828602160378794No Hit
ACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1064140.24706507773643774No Hit
ACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1054530.24483389067735983No Hit
ATGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1027530.2385652069525832No Hit
CTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1018080.23637116764891136No Hit
TTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT975240.22642485613893243No Hit
TAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC967600.2246510508182919No Hit
ATTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG956120.2219856993679054No Hit
AGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC889670.20655777220081623No Hit
GCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC865400.20092292205265588No Hit
CCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC847560.19678094732487753No Hit
GTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC838870.1947633598593846No Hit
CTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG819610.19029169880237726No Hit
ATTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC813620.18890097970936198No Hit
GTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG777040.18040807412964607No Hit
GGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC762380.17700441104056366No Hit
AAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC757540.1758806914395296No Hit
CCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC710910.16505444247336906No Hit
TGTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG705840.16387732297393878No Hit
CTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC693720.16106338050192792No Hit
CGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC676700.15711178802060577No Hit
TCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT658970.1529953523746691No Hit
CCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT655400.15216649308217087No Hit
ACTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG619900.143924334851446No Hit
TGTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC595550.13827091082558263No Hit
GTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC593200.13772530316805576No Hit
TCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC584050.13560091590577034No Hit
CAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC559260.12984533555254024No Hit
ACTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC553610.12853355543976291No Hit
ACGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT550350.12777666992336395No Hit
TCTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG549250.12752127910494712No Hit
CTGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT541680.12576372592729676No Hit
TGTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC530670.12320749600841564No Hit
GAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC513350.11918625148570708No Hit
AGTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG509920.11838989647918914No Hit
TTGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT499520.11597529237779369No Hit
ATGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT498710.11578723186605039No Hit
CTGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT497820.11558059747660404No Hit
AGTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC495440.11502802461493856No Hit
CCGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT489590.11366980980790362No Hit
GCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT483550.11226748204132395No Hit
TATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG477760.1109231976425663No Hit
CCTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG461540.10715734393827454No Hit
ACGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGGACT451800.1048959743279292No Hit
GCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC451030.10471720075503743No Hit
TTATATTAATAAAATACTAATTTATCAGTTATCTATATAATATCTAATCT441090.10240939645043447No Hit
GTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT436400.10132050287009363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)