FastQCFastQC Report
Tue 18 Jul 2023
SRR11453101_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11453101_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44030925
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length61-75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC4452331.0111824814036952No Hit
TTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG3942560.8954070349419186No Hit
ATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC3724930.8459804103593099No Hit
CTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC3319820.7539746212463172No Hit
ATTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG2815930.6395345998295516No Hit
ACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC2802110.63639589674757No Hit
TCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC2674800.6074821276182591No Hit
TTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC2614020.5936781932244213No Hit
CTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG2387660.5422688712535565No Hit
GTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG2273630.516371164130665No Hit
TCTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG2267400.5149562494996415No Hit
ACGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT2242650.5093352002030391No Hit
GTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC2143730.48686917206486124No Hit
ACGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT1999830.4541875965585552No Hit
CCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1987270.4513350559862188No Hit
ATACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1834550.4166503429123962No Hit
TCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1816830.4126258987291319No Hit
ACTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1801700.4091896774823604No Hit
TCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1697300.3854790695403288No Hit
ATGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1637120.37181140300822657No Hit
CTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1636520.3716751351464908No Hit
CTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1555650.353308498515532No Hit
TGTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1494970.3395272754319833No Hit
TTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1494960.3395250043009544No Hit
AGTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1485320.33733563398906563No Hit
GTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1480180.3361682726401955No Hit
CCTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1444670.32810348635646425No Hit
TATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1422070.3229707302310819No Hit
ACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1374740.3122214670711551No Hit
TTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC1337230.3037024545816378No Hit
AGTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1260690.2863192176862058No Hit
TGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1246110.2830079086460255No Hit
GCTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1233710.280191706170152No Hit
TAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1194780.2713501930745266No Hit
GCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1181340.26829779297164436No Hit
AATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1153770.26203628472488366No Hit
CCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1118180.253953329392921No Hit
AGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1114100.25302670793311743No Hit
GGTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1101940.2502650126019383No Hit
CCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1090670.2477054479323339No Hit
GCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1089110.24735115149182083No Hit
ACGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGGACT1086730.2468106223069354No Hit
TCGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT1055120.2396315771244869No Hit
ATTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC1020170.23169397417837578No Hit
CGTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG1010210.22943192767356127No Hit
TGTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1006520.228593880323886No Hit
TATGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1004070.2280374532217981No Hit
GGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC938560.21315927385127612No Hit
AAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC937440.21290490717603594No Hit
CTGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT906400.20585531646223645No Hit
CCGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT892240.2026393949252713No Hit
CTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC854850.19414763600810112No Hit
CATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG852920.19370930771951758No Hit
CGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC846680.19229212195746512No Hit
AATGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC841980.1912246903738679No Hit
TCTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC807580.1834119996343479No Hit
GGTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC756290.17176336858696473No Hit
GCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT749480.17021672835626325No Hit
CGTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC721770.16392342427509757No Hit
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG716700.16277196084342993No Hit
CAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC705690.16027144558057774No Hit
GTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC681330.1547389703941037No Hit
GATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG679280.154273388533173No Hit
ATGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT676890.15373058821725866No Hit
ACTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC673910.15305379117063744No Hit
GTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT664570.15093255478961662No Hit
GAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC635670.14436898611600824No Hit
ACGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT618870.14055348598740544No Hit
TCGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGGACT596310.13542981438613882No Hit
CATGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC594890.13510731378003074No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG578520.13138947228567194No Hit
TCGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT573840.1303265829641326No Hit
TTGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT570820.12964070139339567No Hit
TTTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGATT566100.1285687275477406No Hit
CTGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT547910.1244375402061165No Hit
ATGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT546560.12413093751721092No Hit
CCTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC522660.11870293435806765No Hit
TTGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT517800.11759916467800756No Hit
CTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG492380.11182594960246689No Hit
CTGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGGACT485470.11025659806147611No Hit
AGGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT475250.10793550214990941No Hit
CCGGTAAGTATTATAGCCTGTGGGAATACTGCCAGCTGGGACTGAGGACT474710.10781286107434719No Hit
TTTTGCTGGCTCCGGTGCGCTTGTGACGGCCCGTGAAAATCCACAGGAAG473580.10755622326807807No Hit
AGTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC465350.10568708243126848No Hit
ACGTCTAGAGGTATGATTCTCGCTTGGGGTGCGGGAGGTCCCGGGTTCGA453500.10299579216198615No Hit
TGTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC446530.10141281383482179No Hit
GCGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT443340.10068832303659304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)