FastQCFastQC Report
Tue 18 Jul 2023
SRR11453102_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11453102_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40531334
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length61-75
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC2508220.6188348007494646No Hit
ACGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT2416500.5962053950654572No Hit
TCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1859370.45874877940114184No Hit
CTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1858980.4586525575496726No Hit
ATGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1780220.4392206780067984No Hit
ATACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1767690.43612924262497754No Hit
TTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1749290.4315895450171958No Hit
TCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1745950.430765491212305No Hit
TGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1602580.3953928582760192No Hit
GTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1485050.3663955398063138No Hit
CTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1375640.3394016096287381No Hit
ACACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1319150.32546424452745626No Hit
CCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT1222470.3016110942709164No Hit
TTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC1220960.30123854299984304No Hit
TAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1133970.27977613566827086No Hit
AGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1087940.26841948996793447No Hit
GCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1070300.26406730160916986No Hit
TTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC1042940.25731696864455533No Hit
CCACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC1025920.2531177483573573No Hit
GGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC942290.23248432928459745No Hit
AAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC912980.22525288706263655No Hit
ATTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC911280.22483345847930888No Hit
ATTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC848030.20922824795255937No Hit
GCGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT837110.20653403611141938No Hit
CTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC836950.20649456048004736No Hit
CGACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC779300.1922709970513184No Hit
GTGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT764780.18868858350430806No Hit
CTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC746750.18424017329407416No Hit
TTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG727140.17940194122404163No Hit
TCTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC712320.17574551086820878No Hit
TTTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGATT669780.16524992737717442No Hit
GTTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC669090.1650796887168826No Hit
CAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC661920.16331068698602422No Hit
GAACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACCC649180.16016743983802753No Hit
ACTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC624670.15412026655722708No Hit
TGTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC594530.1466840444975238No Hit
ACTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC587170.14486816545441114No Hit
TTTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG586510.1447053284750016No Hit
TCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC585130.14436485115441797No Hit
TGGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT581860.1435580679382524No Hit
ACGGCGCCAGTGAAATACCACTACCTTTATAGTTTCTTTACTTATTCAAT575350.14195190318680356No Hit
AGGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGAT523280.1291050524021736No Hit
ATTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG509740.12576442709731686No Hit
GTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC494460.12199450430128947No Hit
ACGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT486390.12000345214396348No Hit
TTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATACTGCCAGCTGGGAC477280.11775580838271942No Hit
TTATATTAATAAAATACTAATTTATCAGTTATCTATATAATATCTAATCT473330.1167812537332228No Hit
CCTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC471940.11643830918567843No Hit
ATTATCTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAG450170.11106715609212368No Hit
ATTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCCGGTTCGATT445290.10986314933527723No Hit
CTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG444190.10959175436959465No Hit
CCTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAGC438610.10821504172549563No Hit
TCGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT436210.10762290725491541No Hit
TTGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT433020.10683586185443589No Hit
CTGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT429040.10585390552405702No Hit
AGTACGGACCAAGGAGTCTAACGTCTATGCGAGTGTTTGGGTGTAAAACC422550.10425267522652967No Hit
GTTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG416740.10281921636233339No Hit
TCTTGGGCCAGCATCAGTTTTGGTGGCAGGATAAATCCATAGGAATGTAG414520.10227149197704669No Hit
TTTAGCGCGCTTCCCTTGCAAGGAAGAGGTCATCGGTTCGATTCCGGTTG412910.1018742684363658No Hit
TTTGGGCCAGCATCAGTTTTGGTGGCAGGATAGAATACTGCCAGCTGGGA407330.10049755579226678No Hit
ATGTCAGAATGGGCGCTTGTCGCGTGCCAGATCGGGGTTCAATTCCCCGT407140.10045067848001253No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)