FastQCFastQC Report
Wed 30 Aug 2023
SRR11542141_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542141_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15502621
Total Bases471 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC6839264.411679805627706No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC5367753.462479022095683No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC4648702.9986542275657775No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA3573542.3051198890819817No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3142532.0270959342939494No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2481771.6008712333224169No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2197791.417689305569684No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC2007981.2952519448162991No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT1960561.2646635688249104No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT1792961.1565528177461089No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1783931.1507279962530208No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1623691.047364829469804No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA1480400.9549352977151413No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1456500.9395185497987728No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT1427420.920760431413501No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1399640.9028408809065254No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1344430.8672275481675003No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1110240.7161627701535115No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG1107520.7144082281312302No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1069420.689831738775011No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTATT941200.6071231438864434No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTC897970.5792375366720247No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC852110.5496554421345913No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT827730.5339290691554673No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC824860.532077769301075No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG771030.4973546086174718No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC756170.4877691327163323No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTAT727940.4695593087130234No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG695800.4488273305526852No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT689920.4450344235339302No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT666090.4296628292725469No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC646300.4168972459560225No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA634370.4092017730421198No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC606490.39121771731373683No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCC597040.38512197389073755No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCT579080.37353683612596866No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG576190.37167263522729477No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC570320.3678861787306804No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC554430.35763629904904465No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC528790.34109716028018744No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG516260.3330146560378403No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC514550.3319116167517738No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG494200.318784804195368No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT488950.3153982800714795No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT487170.3142500871304278No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA474980.3063869006408658No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT461680.29780770619368174No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC459610.29647244811054857No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA450060.2903121994661419No Hit
AACGATGCCGACCGGCGATGCGGCGGCG447480.288647964753831No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC436600.28162979666470594No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC425310.27434715716781055No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG417580.26936090355301856No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG413050.2664388170232634No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTATT407880.2631038970765008No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA400110.25809184137314584No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC391220.25235732719002807No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG390540.25191869168445774No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC380060.24515854448096228No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC374880.241817174012059No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG361160.2329670576349638No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT348540.22482649869335No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC333080.21485399146376605No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGT330200.21299624108723292No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC325320.20984838628255184No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG306290.19757304264872372No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG304400.1963538939641239No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC302680.1952444041559166No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG302170.19491542752673885No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCG293710.18945828579567286No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTAT291000.18771019429553235No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA278310.17952448169893337No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGT275300.17758287453457064No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC274880.17731195260465957No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC268500.17319651947886747No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC266980.17221604011347502No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTT257330.16599128624766096No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGA256500.16545589290997953No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT254940.1644496114560241No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT253500.16352073626775757No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT247890.15990199334680247No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC245960.15865704257363966No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG239330.15438034639432904No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG228930.14767180336795951No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCC207990.13416441000525006No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTAT202750.13078433640350234No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTAT196020.12644313500278437No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC194540.12548845772595485No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA192840.12439186896202907No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC191870.12376616831437728No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTC188920.12186326428285901No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGG187490.12094083961673319No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCTC187050.12065701664254064No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC185420.11960558153360003No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC183470.11834772971615573No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT183470.11834772971615573No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGC183280.11822516979548169No Hit
TCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGC178780.11532243483214871No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCT178490.11513536969006725No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC171480.11061355366940855No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC171480.11061355366940855No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG171050.11033618121735674No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG169890.10958792064903089No Hit
GGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC167980.10835587092014956No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG167510.10805269637953478No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC167230.10787208175959406No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG166550.10743344625402376No Hit
CCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT166520.10741409468760155No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTATT160520.10354378140315756No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCG157210.10140865857457264No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT155450.10027336667780241No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)