FastQCFastQC Report
Wed 30 Aug 2023
SRR11542142_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542142_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15381811
Total Bases466.1 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC6791294.415143314399065No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6412634.168969440594479No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC4735833.078850728305009No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA4294082.7916608779031287No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT2754121.7905043820912896No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2127441.3830881162172646No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC2095711.36245985599485No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1951791.268894800488707No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT1885501.2257984446694867No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1770181.1508267784593116No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1758131.1429928504517446No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1705191.1085755766989986No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA1662471.0808025140862803No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1555931.0115388883662657No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1554041.0103101643883154No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1433460.9319188748320988No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1205660.7838218789712084No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1155930.7514914856254573No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG1099380.7147272840629754No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT1078320.7010357883086719No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTATT1038520.6751610717359614No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC959760.6239577381362962No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC948040.6163383492359905No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT945300.614557024527216No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG930510.6049417718108746No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTC923480.6003714387077048No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT866170.5631131470800155No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG855060.5558903304688895No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC810850.5271485912809616No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT713450.4638270487135747No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCC702760.4568772818753266No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA686160.446085314661583No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC665230.43247833431317034No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC663980.4316656861796052No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG636750.4139629592380247No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG584680.38011128858623994No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC577000.37511837845361645No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA571340.371438707704834No Hit
AACGATGCCGACCGGCGATGCGGCGGCG561040.36474248708425816No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCT550490.35788373683696934No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC537270.3492891701763856No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG536540.3488145836663836No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC533770.34701375540240353No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA530740.3450438963266419No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG523500.34033703833703327No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC517700.33656635099729154No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTAT511350.3324380984787812No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA429990.27954445676130074No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC425410.27656691399991845No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG422890.2749286153626514No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT420670.2734853522774399No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTATT410230.2666981150659048No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT407540.2649492962824729No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG393570.2558671407417501No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC385540.2506466891317284No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG369650.24031630605784973No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA364840.2371892360398915No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTT362930.23594750969180414No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT355950.23140968251397706No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC349020.22690436126149255No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT326750.21242622211389806No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC325790.21180210834732008No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC309320.2010946565394673No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG308670.20067207951001345No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC305890.19886475006096485No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCG303320.19719394549835514No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGT299310.19458697028587854No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG294710.19159642515435926No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGT291660.1896135637084606No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG283920.18458164646542594No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC283210.18412006232556102No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTAT282230.18348294618884603No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGGA267810.17410823732003988No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC262390.1705845950129019No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG254700.1655851836952099No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC253760.16497407229876898No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC252050.163862369652052No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG245130.15936354958463606No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC240910.1566200494857205No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC230450.14981980990404836No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGG227210.14771342594184783No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT224100.14569155738553802No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT216630.14083517213935343No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA214380.13937240549893637No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCC205610.13367086619384413No Hit
GGGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC199680.12981566344821166No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGC198040.12874946909697432No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC196990.12806684466477972No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC194360.1263570329917589No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCT193060.12551187893285126No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCG192610.12521932560476787No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCTC184930.12022641547214433No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC183860.11953078866981269No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTC182970.11895218319871437No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTATT180540.11737239522706397No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG178090.11577960488527651No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC177870.11563657881376907No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC174390.11337416640992404No Hit
ACGATGCCGACCGGCGATGCGGCGGCG172300.1120154187306033No Hit
AACGATGCCGACCGGCGATGCGGCGGC167590.10895336056333028No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG165580.10764662236455771No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG164560.10698350148756867No Hit
CTTCTGGCGCCAAGCGCCCGGCCG162310.1055207348471516No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG161620.10507215307742372No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCC156410.10168503565672468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)