FastQCFastQC Report
Wed 30 Aug 2023
SRR11542143_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542143_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7449817
Total Bases214.6 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC4766836.398586703539161No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4184825.617346036822113No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3387494.547078136281737No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3370864.524755440301419No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2274043.0524776648876073No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1802832.4199654837159086No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1075781.4440354709384138No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC818711.0989665920652816No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC804991.0805500323028068No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT508560.6826476408749369No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC493150.6619625690134402No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG481240.6459755991321666No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC445540.5980549589338906No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC369180.4955557968739367No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC362510.48660255681448283No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC350380.4703202776658809No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC346900.46564902198268765No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC318590.4276480885369399No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC316460.4247889579032612No Hit
GAGGGCGCACCACCGGCCCGTCTCGC305560.4101577260219949No Hit
TCGCTTCTGGCGCCAAGCGCCCGG293780.3943452570714153No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG281140.37737839734855233No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC264100.3545053522791231No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG241950.3247730783185681No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG231920.3113096603581001No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC228340.3065041731897576No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT226300.30376585089271324No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT214440.28784599675401423No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG202680.27206037410046446No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC193580.25984530895188435No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG193170.2592949598627725No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT191240.2567042921993923No Hit
TAACTGTGGTAATTCTAGAGCT188130.25252969301125117No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG181110.24310664275377503No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC168890.2267035552685388No Hit
AGGGCGCACCACCGGCCCGTCTCGC166390.223347768139808No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG160100.21490460772392128No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC146010.1959913914663944No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC144410.19384368770400667No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC129710.17411165938706952No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG129570.1739237353078606No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG122720.16472887857513815No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA120770.16211136461472814No Hit
CTGCATAATTTGTGGTAGTGGG117980.15836630617906455No Hit
TTTGGTGACTCTAGATAACCTCG117770.15808442006025114No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC112520.15103726708991644No Hit
CCGAGGGCGCACCACCGGCCCGTCTCG107440.14421830764433544No Hit
AGGGCGCACCACCGGCCCGTCTCG106480.1429296853869028No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC105590.14173502516907463No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGG105150.141144406634418No Hit
AACTGTGGTAATTCTAGAGCT101910.1367953065155829No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG98400.1320837813868448No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC96940.130124001703666No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC95570.12828503035712152No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT94220.12647290530760688No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCG87140.11696931615904121No Hit
TGAGGGCGCACCACCGGCCCGTCTCGC86500.11611023465408614No Hit
ATTGATCATCGACACTTCGAACGCA86390.11596258002042198No Hit
GGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC84050.11282156326792994No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT81320.10915704372335588No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC81280.10910335112929619No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG79920.10727780293126664No Hit
ACTCTAGATAACCTCGGGCCGATCGCAC78300.10510325287184906No Hit
ACCGGCTCCGGGACGGCTGGG77700.10429786396095367No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGC77580.10413678617877459No Hit
GAGGGCGCACCACCGGCCCGTCTCG76670.10291527966391659No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG76030.10205619815896148No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC75410.10122396295103625No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG75020.10070046015895424No Hit
ACTGCATAATTTGTGGTAGTGGGG74770.10036488144608115No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAG74750.1003380351490513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)