FastQCFastQC Report
Wed 30 Aug 2023
SRR11542144_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542144_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8908364
Total Bases257.9 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4729655.309224005664789No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC4548505.105875781456618No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3491323.919148341940226No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3330963.739137736176923No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG2330072.6155981053311246No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1819402.0423503125826468No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC988781.1099456645462624No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC910571.0221517665869964No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC707450.7941413260616651No Hit
TCGCTTCTGGCGCCAAGCGCCCGG702820.7889439632237748No Hit
GAGGGCGCACCACCGGCCCGTCTCGC685640.7696587162356635No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT621700.697883472206569No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC603030.6769256397695469No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC554930.6229314383651139No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG478210.5368101258547585No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG470620.5282900429304416No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG435320.4886643608186644No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC407590.45753631081980933No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC387350.43481608968829744No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC384090.4311566074309492No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT382880.42979833334156525No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC374640.42054859904691816No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC371590.41712485030921503No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC298990.3356284049461832No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC288670.32404378626647945No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG286430.3215292953902647No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC279410.3136490605906988No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGG270830.30401766250234047No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG267410.300178573753834No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG258670.29036756917431755No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC246640.2768634061203606No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG241100.270644531364008No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG218800.24561187665883433No Hit
AGGGCGCACCACCGGCCCGTCTCGC217990.24470261879734595No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC207440.23285981578660236No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG195590.2195577100351984No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT194700.21855864892813093No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC191630.215112449379033No Hit
TGAGGGCGCACCACCGGCCCGTCTCGC188510.2116101228014482No Hit
GAGGGCGCACCACCGGCCCGTCTCG178270.20011530736732358No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGC177140.19884683652351878No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT174450.19582720239092163No Hit
AGGGCGCACCACCGGCCCGTCTCG169680.19047268387326785No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG167910.1884857870648303No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCT162330.1822220106856882No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG156850.17607048836351993No Hit
TCGCTTCTGGCGCCAAGCGCCCG155670.17474589049122824No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCT149140.16741570057083432No Hit
CCGAGGGCGCACCACCGGCCCGTCTCG149020.16728099570246568No Hit
TTTGGTGACTCTAGATAACCTCG149020.16728099570246568No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA148190.16634928702958254No Hit
CTGCATAATTTGTGGTAGTGGG143450.16102844472902095No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC140840.15809861384200286No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC136760.15351864831746884No Hit
ACCGGCTCCGGGACGGCTGGG136720.15347374669467928No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC136170.15285634938132298No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG129330.1451781718843101No Hit
TTGCGCCGCGACCGGCTCCGGGACGGCTGGG129090.14490876214757278No Hit
TAACTGTGGTAATTCTAGAGCT123430.13855518252285157No Hit
CGCTTCTGGCGCCAAGCGCCCGG119670.13433442998063394No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC114000.12796962495021533No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC112070.12580312165061958No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAG109150.12252530318698249No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT106870.11996591068797818No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC104220.11699117817817054No Hit
GGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC101010.11338782294930921No Hit
AGGATTCAACCCGGCGGCGGG100960.11333169592082228No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG99040.1111764180269239No Hit
CTCGCTTCTGGCGCCAAGCGCCCG98280.11032328719392248No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG96970.10885275904756475No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGAG96140.1079210503746816No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT96110.10788737415758944No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG95220.10688831305052196No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCC95010.10665257953087683No Hit
TCGCCGCGACCGGCTCCGGGACGGCTGGG94710.10631581735995521No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC93170.10458710488255755No Hit
ATTGATCATCGACACTTCGAACGCA91830.10308290051910765No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG91800.1030492243020155No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC91000.10215119184622452No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC90020.10105110208788055No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC89900.10091639721951191No Hit
CGCTTCTGGCGCCAAGCGCCCGGCCG89690.10068066369986678No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT89430.10038880315173469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)