FastQCFastQC Report
Wed 30 Aug 2023
SRR11542145_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542145_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25593307
Total Bases764.7 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC268990210.510177524147231No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC25187319.841365947745635No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC8589123.3560024110991202No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG8431843.2945488443521582No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6521422.5480958752223772No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC4427771.73004996970497No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2647171.0343211996792756No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2216950.8662225635788294No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC2080010.8127163871398095No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1667210.6514242180582603No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA1477000.5771040061372296No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1475060.5763459954588909No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1436850.5614163109128492No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1419470.5546254729801038No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1218320.4760307059966889No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1153530.4507154937030998No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG1125310.43968917342334857No Hit
ATTGATCATCGACACTTCGAACGCA1108510.43312495723979705No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1078110.42124685176479926No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT979070.3825492344541485No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT949150.3708586780129664No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC938360.3666427320236498No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT901950.3524163563544172No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG868080.339182427655793No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA808180.3157778711442019No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG798210.31188232142098715No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG708650.2768887975281975No Hit
TCGACTGCATAATTTGTGGTAGTGGGG686540.2682498201580593No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT623780.2437277839866493No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG619700.24213361719921542No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG594620.2323341801823422No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT593220.23178716216704626No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC560790.2191158805698693No Hit
CGACTGCATAATTTGTGGTAGTGGGGG551380.21543913805277293No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG522350.2040963287784576No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG510670.19953263562227422No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC509130.19893091580544864No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA501130.1958050985751861No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC499490.19516430604298224No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC485490.18969412589002274No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC429830.1679462525104708No Hit
TTTTGGTGACTCTAGATAACCTC419420.16387878283959162No Hit
CCCCCGCGGGGGCGCGCCGGC411730.1608740910270017No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG380540.14868731110051547No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGG373920.1461006973424732No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT371900.14531142849183187No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA364470.1424083257392255No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC364280.14233408758000676No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT364050.14224422033463668No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC344090.13444530634513155No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG328190.12823274459998468No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG312760.12220382461711572No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG301580.11783549503782377No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG300680.11748384059941921No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG294020.11488159775522562No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT292130.11414312343457607No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC288820.11284981655555494No Hit
ACTGCATAATTTGTGGTAGTGGGGG287490.11233014944102378No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA281790.11010300466446168No Hit
CGACTGCATAATTTGTGGTAGTGGGG280470.10958724482146837No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC273380.10681698930114815No Hit
TGACTGCATAATTTGTGGTAGTGGGGG266120.10398031016468484No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC262930.10273389054411765No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC257510.10061614937061476No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)