FastQCFastQC Report
Wed 30 Aug 2023
SRR11542146_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542146_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22331689
Total Bases662.7 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC18822608.428650425858967No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC15156316.786907161388464No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6974123.122970233017306No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6752413.0236897889810304No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG6327392.8333683135207552No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2869261.2848378821682498No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC2597711.163239377012639No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG2487951.1140894896037643No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2425441.0860978764302154No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA1598870.7159646545319523No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1316090.5893374209178714No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1290700.5779679271012595No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1219850.5462417106023641No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1161530.5201263549747626No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG1156450.5178515606231128No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1151800.5157693177618585No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1103450.4941184699464514No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1102110.4935184257670792No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1071410.47977114494116413No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1035340.4636192094561231No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT1020620.4570276793663032No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT954080.4272314557130005No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC951010.42585672763040894No Hit
ATTGATCATCGACACTTCGAACGCA919470.4117332997069769No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC829200.37131092054882187No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG809650.36255654464827985No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC682210.30548965642500214No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT671940.30089081036369436No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC669080.2996101190554821No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC666390.2984055527551006No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC641530.28727338984525536No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG616650.27613227105213584No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG592390.2652687846405169No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG565980.2534425407769202No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA545850.24442844426142601No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA487710.21839369158329225No Hit
TCGACTGCATAATTTGTGGTAGTGGGG480900.2153442133284231No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG467320.2092631685852333No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA413260.18505541609503875No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG390940.17506065036101837No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC390490.17485914298734861No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG369110.16528530376721617No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG359760.16109842833652216No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC343480.15380833935131374No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC337180.150987236119937No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT330670.14807209611418107No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA326940.14640182388354056No Hit
CGACTGCATAATTTGTGGTAGTGGGGG311210.13935802168837297No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC305260.13669364641429496No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC301730.13511293301639657No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT300980.13477708739361363No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG295610.13237243273448773No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC282550.12652424095642745No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC281390.12600479972652315No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC278620.1247644098930448No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC274310.12283441704745215No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC273500.12247170377484658No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC268260.1201252623570031No Hit
CCCCCGCGGGGGCGCGCCGGC266450.11931475492068692No Hit
AGATAACCTCGGGCCGATCGCAC259020.11598764428431722No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC253380.1134620852009895No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT251750.11273218071414125No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG246750.11049320989558828No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT244750.10959762156816712No Hit
ATAACCTCGGGCCGATCGCAC243410.10899757738879491No Hit
TTAGATAACCTCGGGCCGATCGCAC241350.1080751214115511No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG239300.10715714337594438No Hit
ACTCTAGATAACCTCGGGCCGATCGCAC237880.10652127566347534No Hit
TTTTGGTGACTCTAGATAACCTC237230.10623020945706345No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA234540.10502564315668196No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG232530.10412557688762368No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT230090.10303295912816984No Hit
TCTAGATAACCTCGGGCCGATCGCAC229300.10267920173883847No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC228650.10238813553242658No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTA225440.1009507162669156No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)