FastQCFastQC Report
Wed 30 Aug 2023
SRR11542147_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542147_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26373971
Total Bases778.5 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC318666412.082609782197759No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG16006426.069021612255508No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC13424015.089870615236515No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC13022864.937769894415975No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG10460233.966118716062894No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4980531.8884262821097362No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC2392040.9069699818809993No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2096380.7948670300729458No Hit
ATTGATCATCGACACTTCGAACGCA2069270.7845879560571293No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2056190.7796285208624821No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2046850.7760871504711975No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1578190.598389222464831No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1556220.5900590396493574No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1476590.5598663925125268No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1381920.5239711532252765No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1304590.4946505780263427No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1154320.4376739475447213No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1133040.4296053863106167No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG1068290.40505466545026536No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG977240.3705319915609219No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC954380.3618643548216535No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG895440.3395165635087716No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG878760.3331921461504603No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG878510.333097355722428No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT873450.3311787974590554No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC865340.3281037959736894No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG827650.3138131910435482No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT800110.30337107749151615No Hit
CTGCATAATTTGTGGTAGTGGGG767070.29084357452277476No Hit
CTGCATAATTTGTGGTAGTGGG764660.2899297947965439No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT711500.2697735581797675No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT667460.2530752763776073No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC628450.23828417798745588No Hit
TGACTGCATAATTTGTGGTAGTGGGG597180.22642779124918277No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC583920.22140010694635254No Hit
ACTGCATAATTTGTGGTAGTGGGG582500.22086169731512936No Hit
TTTGATCATCGACACTTCGAACGCA577300.21889005641205866No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT560640.21257322228798994No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC537770.20390179393160024No Hit
ATTGATCATCGACACTTCGAACG529220.20065996129289745No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT512820.1944417092139822No Hit
TCGACTGCATAATTTGTGGTAGTGGGG506730.19213261438711673No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG485660.1841436771125592No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG481270.182479157196313No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGG466000.1766893578521035No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG464060.17595378413057328No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC462740.17545329067056303No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC455040.1725337454871699No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA426930.16187550975922435No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG410590.15568000738303686No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC398060.15092911113006077No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT393820.1493214654706339No Hit
CGACTGCATAATTTGTGGTAGTGGGG390310.1479906078610612No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC385350.14610996576890145No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG364990.13839023330995548No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG364690.1382764847963168No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGC361750.1371617493626576No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG356510.13517494199110175No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG355290.1347123647023044No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG348890.13228572974467895No Hit
GGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG338070.12818320001944342No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT324480.12303039235161062No Hit
AGGGCGCACCACCGGCCCGTCTCGC314200.11913260995092471No Hit
GAGGGCGCACCACCGGCCCGTCTCGC305470.11582252820403875No Hit
TAACTGTGGTAATTCTAGAGCT304070.11529170180705818No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC300830.1140632178597603No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGGG298410.11314564651640815No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG297330.11273615186730887No Hit
TCTGCATAATTTGTGGTAGTGGGG296860.11255794586260824No Hit
TGCATAATTTGTGGTAGTGGG288590.10942227850330159No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG276820.10495954515154354No Hit
ACTGCATAATTTGTGGTAGTGGGGG274110.10393201691167402No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG270670.10262770062195034No Hit
CCGCCGAGGGCACACCACCGGCCCGTCTCGC270320.10249499402270519No Hit
TCTGCATAATTTGTGGTAGTGGG269230.1020817077564846No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC265030.1004892285655429No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)