FastQCFastQC Report
Wed 30 Aug 2023
SRR11542148_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542148_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37616718
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length18-37
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC31123098.273738820063995No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC30214778.032271714932707No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC20325095.403206627436237No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG16070984.272297226993594No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG7195061.9127293348664816No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6683281.776678124869905No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC3364200.8943363958546304No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3239180.8611011731539152No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG3140110.8347644789213137No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2942700.7822851531066586No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2905360.7723587156115002No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2428900.6456969478304833No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2196330.5838707140798408No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1957430.5203617178936238No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1920810.5106266846565402No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1774270.4716706013533663No Hit
ATTGATCATCGACACTTCGAACGCA1736830.46171757993347534No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1689750.4492018681693602No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1520390.4041793332422036No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG1517250.4033445980055996No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1509140.4011886417097844No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT1443710.3837947797572345No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1393290.3703911649070501No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1391670.36996050532638175No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1362540.362216608051771No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1281920.34078464793233687No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1257750.33435931332446384No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1090670.2899428918812109No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1042780.27721185032676166No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1010620.2686624601327527No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT946300.25156367974473476No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG919100.24433285221746354No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG878930.23365408965237214No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA870240.2313439465931079No Hit
TCGACTGCATAATTTGTGGTAGTGGGG830760.22084861310867152No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC807190.2145827820491942No Hit
CTGCATAATTTGTGGTAGTGGGG797280.21194831510819206No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG779210.20714459990900852No Hit
ACTGCATAATTTGTGGTAGTGGGG746720.19850748276338195No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC746650.19848887401606913No Hit
CTGCATAATTTGTGGTAGTGGG740110.19675028533855612No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG730680.19424342123627053No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG697080.18531122252611193No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC678720.18043041394520384No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG667180.1773626290310601No Hit
TGACTGCATAATTTGTGGTAGTGGGG664630.1766847389503784No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG650620.17296033109533906No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC644460.17132276133181No Hit
AACGATGCCGACCGGCGATGCGGCGGCG624830.16610433690679766No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC608860.1618588841269991No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG601350.1598624313795797No Hit
TTTGGTGACTCTAGATAACCTCG591220.1571694798041658No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT590430.15695946679877812No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT587930.15629486868046277No Hit
ATTGATCATCGACACTTCGAACG585810.15573128947613132No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC548340.14577029287882054No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG531490.14129090156137492No Hit
TAACTGTGGTAATTCTAGAGCT516150.1372129275073918No Hit
ACTGCATAATTTGTGGTAGTGGGGG505010.13425147829217848No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC504490.13411324188356888No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT481370.12796703848538832No Hit
CGACTGCATAATTTGTGGTAGTGGGG479340.12742738481331625No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC475580.12642782924336993No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG474820.12622579141540205No Hit
TGACTGCATAATTTGTGGTAGTGGGGG460610.12244821571089748No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT446560.11871317428596509No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT444980.11829314827518976No Hit
CGACTGCATAATTTGTGGTAGTGGGGG441390.1173387853772889No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT440870.11720054896867929No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC427750.11371273804376021No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC414140.11009466588765135No Hit
TTTGATCATCGACACTTCGAACGCA401470.10672648262402902No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC392950.10446153223681023No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC385660.10252356412380262No Hit
CCCCCGCGGGGGCGCGCCGGC381850.10151071659148998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)