FastQCFastQC Report
Wed 30 Aug 2023
SRR11542149_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542149_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27168702
Total Bases830.5 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC71

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC13247424.8759856102069215No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12858594.732868725197104No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC10354893.8113304051109984No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA7620132.8047456959850345No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA6371162.345036579222666No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT4261391.5684923041225893No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT4133561.5214418414247395No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3951081.4542763213347476No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3770111.3876665878259478No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3299041.214279578023271No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC3273231.2047796762613097No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC3201721.1784589488301649No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3081011.1340291486873388No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA2913301.0723000311166873No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT2741541.0090802276825739No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTAT2377140.87495530702939No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2240170.8245406791977032No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2147820.7905493608049439No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2134210.7855399201625458No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG2073610.763234842798158No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC2053530.7558439854800572No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT1957620.7205423358097859No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTATT1666990.6135699821066166No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC1516490.5581753592792177No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGT1341150.4936378631559211No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1304040.4799787637996103No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG1297650.47762679277059317No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC1270750.46772569407253983No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1269590.46729873219559775No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA1197200.44065410265091054No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT1164090.4284672856288828No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTATT1162860.4280145588110908No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1149720.42317811134297106No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1147870.4224971807633651No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1139250.41932441233298523No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT1076250.3961359655680275No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT1062240.39097929669220116No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA1022270.37626751546687803No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTAT992510.3653137348998123No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG960610.35357228328390516No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG944350.3475874555950446No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT942390.34686603725124593No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCC889050.32723315232358174No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC865250.3184730724345977No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG865200.3184546689054192No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC845240.31110798005734686No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC826780.3043133970846307No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT815900.3003087891353809No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC809240.2978574390487996No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC797340.2934773991043076No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT785350.2890642328072942No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG770290.2835210898187186No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG743890.2738040264124506No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC730520.2688829227101096No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT727000.2675873142559405No Hit
ACGGGGTCGGCGGCGACGTCGGCTACCC721470.26555188392879425No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC709510.261149759749288No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC693630.2553047988821844No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG633470.2331616725745676No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGT621840.22888101168763972No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG565960.2083132274777058No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTA561480.2066642712633088No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC560310.20623362868053102No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTT552030.20318600424856512No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA528370.19447745424128102No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG520930.19173900909951458No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGG501580.18461684330742043No Hit
AACGATGCCGACCGGCGATGCGGCGGCG497750.18320713297234442No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT495360.18232744427761033No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC485120.17855840150184576No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG479490.17648616411634238No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTATT473180.17416363873401092No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTAT459160.1690032891523489No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG452940.1667138901225388No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA444380.1635632059271731No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC418070.15387926887342648No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC413590.1522303126590295No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTT381690.14048886104312233No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG378570.13934048082238157No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC372120.1369664255583502No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC366440.1348757846436683No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA363280.1337126815995847No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTAT358970.13212629738439474No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG358140.131820798800031No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCCC356480.13120980163130355No Hit
TTAAACGATGCCGACCGGCGATGCGGCGGCGTTA355050.13068346069679737No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC354140.13034851646574797No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC352870.12988106682461312No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG350100.12886151130812212No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC349220.12853760919457985No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC347540.127919250614181No Hit
TCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGC330920.121801917515235No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG324740.11952724130876771No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG316740.11658267664020165No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTC314780.11586125829640298No Hit
AACCCGGCGGCGGGTCCGGCCGTGTCGG311660.11471287807566222No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG309380.1138736771451209No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC306040.11264432139599455No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC303540.11172414493706767No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCT302740.11142968847021105No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC295730.10884951367938006No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCG294230.10829740780402392No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTC291800.10740299628594696No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC286620.10549639066305046No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC284970.1048890742001587No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCT284600.10475288808423752No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG283000.10416397515052431No Hit
ATTTCCACCGCGGCGGTGCGCCGCGAC280890.10338734621919No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC277510.10214326764672085No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC276140.10163901094722891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)