FastQCFastQC Report
Wed 30 Aug 2023
SRR11542151_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542151_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20766275
Total Bases618 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC71

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC19024439.161214517288247No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC18874349.088938675809697No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC14266186.869879167062942No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG13510716.506082578604011No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT8617724.149863179602504No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG6393303.07869369927924No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4044971.9478553568225403No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3969751.911633164830958No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2882681.3881545920007319No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2323741.1189970276325436No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1982580.9547114251352252No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1595590.7683563855337561No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1577220.7595103117915948No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1538210.7407250457773481No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1514140.729134136960047No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1428730.6880049503341354No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1192530.5742628372204451No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1152840.5551501171972345No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1120680.5396634687732875No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG963570.46400714620219563No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG922010.4439939276543338No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG814860.39239584374183617No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT785090.3780600998493952No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC742670.3576327482901965No Hit
ATTGATCATCGACACTTCGAACGCA720500.346956784497942No Hit
AGGGCGCACCACCGGCCCGTCTCGC706460.34019582231286066No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT673860.3244972918831134No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC623780.3003812672229372No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC620110.2986139786745577No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC573480.2761593015598609No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG570170.274565371016227No Hit
AGGGCGCACCACCGGCCCGTCTCG537900.25902575209082995No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA509760.24547493471987633No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG471030.22682450270932078No Hit
CCGAGGGCGCACCACCGGCCCGTCTCG469730.2261984876921836No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG469590.22613107069033808No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC416470.20055113399008728No Hit
GGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC410060.1974643984055879No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG404060.19457509832649333No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT400280.19275483927666373No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC392560.18903727317489535No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCC389110.18737592562941596No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT373550.17988300742429733No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC355310.17109953518384977No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGAG346040.16663556656164863No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG332030.15988905087696278No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGC310610.1495742495945951No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC310540.1495405410936723No Hit
GAGGGCGCACCACCGGCCCGTCTCGC310030.14929495058694928No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGA307420.14803810505254314No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGC307170.1479177175492475No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG302750.14578926649098117No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG299020.1439930849418107No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC297970.14348745742796915No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTT289830.13956764032066415No Hit
ACCGGCTCCGGGACGGCTGGG287170.13828671728559888No Hit
CCGCCGAGGGCGCACCACCGGCCCTCTCGC283080.13631717773168275No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT279700.13468953868712613No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC265420.127813004498881No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG257230.12386910989091689No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG253120.12188993933673709No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGG250160.1204645512977171No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC250060.12041639629639886No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGG248030.11943884976963852No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCG245690.11831202273879161No Hit
CTGCATAATTTGTGGTAGTGGG244080.1175367272175679No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCG243280.11715148720702197No Hit
AACGATGCCGACCGGCGATGCGGCGGCG242450.11675180069608054No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGC232950.11217707557084744No Hit
TGACTGCATAATTTGTGGTAGTGGGG223830.10778533945062366No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCG221290.10656220241714029No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG217440.10470823486638792No Hit
AGGATTCAACCCGGCGGCGGG214700.10338878783026806No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGC211210.10170817828426139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)