FastQCFastQC Report
Wed 30 Aug 2023
SRR11542152_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542152_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25690476
Total Bases750.3 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC23571029.175003219091774No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC16151466.286944624926373No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG15634156.085582065509413No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12281244.7804641689005685No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG7666792.984292700532291No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4811521.8728808294560209No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3508731.365770723749922No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3239741.2610665524453497No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2145200.8350176150881751No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2067690.8048469012407555No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1870920.7282543149453518No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1640070.6383961122401937No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1432240.5574984286005444No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1319980.513801301307146No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1303460.5073709027423237No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1144840.4456281775394119No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1138490.4431564444348949No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1092210.4251419864700055No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1090810.4245970374390883No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1087990.4234993543910981No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1083360.4216971300959936No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG978940.381051717375731No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC902250.35120018796070573No Hit
AGGGCGCACCACCGGCCCGTCTCGC898940.3499117727518945No Hit
ATTGATCATCGACACTTCGAACGCA885490.344676369562012No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC864080.33634254188205776No Hit
AACGATGCCGACCGGCGATGCGGCGGCG863020.33592993761579193No Hit
AGGGCGCACCACCGGCCCGTCTCG759950.2958100114610566No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC728580.2835992606754348No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC713860.27786951086464884No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG693380.2698976850409467No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGAG677270.2636268786923216No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT655010.25496218910073914No Hit
CCGAGGGCGCACCACCGGCCCGTCTCG634100.24682298607468386No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG600040.23356515465108552No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG594370.23135811107587106No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC586360.22824022412040948No Hit
TTTGGTGACTCTAGATAACCTCG579760.22567117868894293No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGG576730.22449175328631515No Hit
GAGGGCGCACCACCGGCCCGTCTCGC573820.22335903780062305No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG555870.21637201272564974No Hit
TCGCTTCTGGCGCCAAGCGCCCGG553370.21539888945615487No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC543140.2114168690373818No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG527040.2051499551818347No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC509610.1983653397469163No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC502280.19551214232075728No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG501560.19523188281914278No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT496550.19328174378707502No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT492580.19173642403511715No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG492090.19154569187429613No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG469820.18287710978963567No Hit
TAACTGTGGTAATTCTAGAGCT455360.1772485647988772No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT453650.17658294848254272No Hit
ACCGGCTCCGGGACGGCTGGG447480.17418128025342933No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCGA438980.1708726611371467No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC431320.16789101143941434No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGAG428610.1668361458152819No Hit
CCGCCGAGGGCGCACCACCGGCCCTCTCGC410840.15991918561571222No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC381300.1484207610633606No Hit
CACTCGCCGAATCCCGGGGCCGAGGGAGCG376110.1464005571558892No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCT367410.143014088178047No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT357900.13931232726088844No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC355470.1383664514429394No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC351400.13678220676020172No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG342080.13315440321152477No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC336280.13089675722629662No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC330870.12879091847110968No Hit
TGACTGCATAATTTGTGGTAGTGGGG330180.1285223364487291No Hit
GGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC326780.12719888880221605No Hit
ACTGCATAATTTGTGGTAGTGGGG324580.12634254032506054No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG322740.12562632159871231No Hit
TAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG317300.12350880536429142No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT316390.12315458849419528No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT315290.12272641425561752No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC313290.12194791564002162No Hit
CCCCCGCGGGGGCGCGCCGGC306610.11934773026393128No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCT301940.11752993599651483No Hit
TTAACTGTGGTAATTCTAGAGCT300730.1170589443340793No Hit
TTTTTTCACTGACCCGGTGAGGCGGGG296570.1154396672136398No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG296240.11531121494206646No Hit
GGGGGGGGCCCAAGTCCTTCTGATCGAGGCC294970.11481686832116307No Hit
AGGATTCAACCCGGCGGCGGG286050.1113447644956053No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG275750.10733549662528634No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT271000.10548656241324607No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC270890.10544374498938829No Hit
CTGCATAATTTGTGGTAGTGGG270580.10532307770397091No Hit
AATTCTAGAGCTAATACATGC270370.10524133534933335No Hit
TCGACTGCATAATTTGTGGTAGTGGGG265870.10348971346424253No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC265030.10316274404569227No Hit
CCGGCCGAGGTGGGATCCCGAGGC258940.1007922157612027No Hit
TCACTCGCCGAATCCCGGGGCCGAGGGAGCGA257210.10011881445871225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)