FastQCFastQC Report
Wed 30 Aug 2023
SRR11542153_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542153_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29446384
Total Bases870.4 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC27054179.187603476202714No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC22648027.691273740096577No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC21088857.1617791848398085No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG17143785.822032341899773No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11224563.811863623051306No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG10406493.534046828975673No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG3599131.22226552503017No Hit
ATTGATCATCGACACTTCGAACGCA3472351.179211002614107No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2692340.9143193948703514No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT2516970.8547636952639074No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT2347640.7972591812970992No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC2133900.7246730192746247No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2002580.6800767116261203No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1915960.6506605361120061No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1855350.6300773636586414No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1835090.6231970621588037No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1787670.6070932172860342No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1633790.5548355275133272No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1615800.5487261186297102No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1544450.5244956392608342No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1489080.5056919722299349No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1472020.4998983915987783No Hit
AACGATGCCGACCGGCGATGCGGCGGCG1463900.49714083739449977No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG1426850.4845586473368003No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA1364480.4633777784056609No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG1318990.4479293620568149No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1303930.44281498196858404No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1231800.41831961438796694No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1230100.41774229392648005No Hit
ATTGATCATCGACACTTCGAACG1222080.41501869974934785No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1172060.3980318941707749No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC993590.337423433722796No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT957430.3251434879066985No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT947800.32187313729251105No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG900420.3057828764306001No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG855200.29042615215504897No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT854830.2903005000546077No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGGT798840.27128628085540146No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT793150.2693539553107777No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC773330.2626230779303836No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG764430.25960063551436396No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC753720.2559635166069966No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT727060.24690977336979644No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT634190.21537109615903943No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT597010.2027447580660498No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC583600.19819071842573266No Hit
TTTGATCATCGACACTTCGAACGCA582900.19795299823570867No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG547740.18601265269107406No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC542630.18427729530389877No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT527090.17899990708536573No Hit
TCGACTGCATAATTTGTGGTAGTGGGG525400.17842598262659345No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT521310.17703701751631032No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC506660.1720618735393792No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG483620.16423748328487464No Hit
GAGGGCGCACCACCGGCCCGTCTCGC482210.16375864690211198No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC475590.16151049310502777No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG468510.15910612318307063No Hit
TAACTGTGGTAATTCTAGAGCT468280.15902801512063416No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC466430.15839975461842787No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT466310.1583590025858523No Hit
TGTCCGCCCGGAGGATTCAACCCGGCGGCGGG453340.15395438706497883No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG450420.15296275427230727No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC434190.14745104186646485No Hit
ATTGATCATCGACACTTCGAACGC421640.14318905845960578No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA418730.1422008216696488No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC418410.14209214958278069No Hit
CTGCATAATTTGTGGTAGTGGGG397470.13498091989834815No Hit
TCCGCCCGGAGGATTCAACCCGGCGGCGGG390490.13261051000353727No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG386080.131112872806386No Hit
CCCCCGCGGGGGCGCGCCGGC381740.12963900762823713No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC381150.12943864346807404No Hit
AGGGCGCACCACCGGCCCGTCTCGC380460.12920431928076467No Hit
ACTGCATAATTTGTGGTAGTGGGG377320.12813797442837124No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA371230.12606980877516236No Hit
ATTGATCATCGACACTTCGAACGCAC370160.1257064364846971No Hit
TCGCTTCTGGCGCCAAGCGCCCGG331610.11261484601980332No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA331590.11260805401437406No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC326430.11085571661362563No Hit
CGACTGCATAATTTGTGGTAGTGGGG325490.11053649235845053No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGG318580.10818985448264207No Hit
TTGATCATCGACACTTCGAACGCA316550.10750046593157245No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG316220.10738839784198971No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC311230.10569379248738997No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCG310290.10537456823221487No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTT309910.10524552012905898No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC309130.10498063191731793No Hit
ACGATGCCGACCGGCGATGCGGCGGCG306560.10410785921965834No Hit
CCGAGGGCGCACCACCGGCCCGTCTCG298950.10152350115382588No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC298250.10128578096380188No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCG298070.10122465291493857No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCG295920.10049451233129338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)