FastQCFastQC Report
Wed 30 Aug 2023
SRR11542154_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542154_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31963391
Total Bases960.2 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC73

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC15656814.898356998479917No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC14782584.624847219745865No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC14655134.584973477939184No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC10875153.402376800383914No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG10705083.349169054059377No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT9158272.8652372960052954No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG6338131.982934163649908No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6312191.9748186292249157No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA5058691.5826512274620674No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4557611.425884381291084No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC4541191.420747254257222No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG3885421.215584416559557No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG3416031.0687320378491758No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG3048500.9537473667922155No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT2817840.8815835591411436No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2760360.8636004859434344No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC2598290.8128956029727885No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC2302620.7203929019921572No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC2193990.6864071462255052No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1843540.5767660884291032No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC1762410.5513839254414528No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1723020.5390604520027302No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC1719040.5378152774841694No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1676170.5244030584865041No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1571150.4915467198082957No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1492500.46694044446035154No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG1440830.4507750757734059No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG1439080.45022757441474215No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG1402100.4386580885613795No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC1346220.4211755880344485No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1327030.4151718445643017No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1218790.38130810338615195No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1216430.380569758696754No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC1181410.36961347436509473No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC1178990.36885635820054263No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1144340.3580158312990008No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1098140.3435617954302783No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1018340.3185957334752123No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA995880.3115689446091624No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA967660.30274009412831077No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG964000.3015950341439054No Hit
GTGCATTTATCAGATCAAAACCA956020.29909842794839886No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT930860.2912269227004106No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA928480.29048232085262793No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC866000.27093495805873663No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC855790.2677406787033328No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA821910.25714105239960305No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG803940.25151899559092467No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC790800.24740804253215815No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA774500.24230845844860455No Hit
ATTGATCATCGACACTTCGAACGCA769200.24065031147665153No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT765110.2393707225869746No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC761600.23827259129045475No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC751720.23518155504839897No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC746760.23362977976898636No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC739180.23125831674117428No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT730900.22866785316989677No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT708040.2215159211361523No Hit
CCCCCGCGGGGGCGCGCCGGC693790.21705769578703335No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC688220.21531507717688653No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC682040.2133816152360055No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA667100.2087075179226134No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC663700.20764380099720958No Hit
TGTGCATTTATCAGATCAAAACCA658850.20612644008891298No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT652220.20405219208437553No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC638320.19970346700698932No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCG632110.1977606193285312No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT601230.18809956678251066No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC560300.17529429214816414No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC544530.17036052276180585No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCC537550.16817677448553564No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCC526880.1648385804872831No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG525710.16447253672177647No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT515740.1613533432669894No Hit
AACGATGCCGACCGGCGATGCGGCGGCG505900.15827482134170306No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTA495490.15501797040245197No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG479450.14999972937789985No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC471580.14753753755350926No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT464700.1453850750691627No Hit
AGGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGG451710.14132105069828166No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG448210.14022604798095423No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTC444440.13904657362543293No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT437380.13683779671562382No Hit
GTGCATTTATCAGATCAAAACCAA432530.1353204358073272No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC408250.127724245528267No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC408030.127655416786035No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCC401720.12568128331565323No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT398800.12476773819148287No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC398540.1246863951324814No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGG394130.1233066917086488No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC358300.11209699246240801No Hit
TTTTGGTGACTCTAGATAACCTC357770.11193117776521272No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC357100.11172156295932431No Hit
TCGCGCCGTCGGGCCCGGGGG356300.11147127662393519No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT353680.11065158887553576No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC344470.10777016743936836No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC343090.10733842351082212No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC337730.10566150506371494No Hit
TGTGCATTTATCAGATCAAAACCAA334130.10453521655446382No Hit
GTGCATTTATCAGATCAAAACC332720.10409408688834049No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCG330230.1033150706694418No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC323710.10127523703602037No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC320750.10034917759508058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)