FastQCFastQC Report
Wed 30 Aug 2023
SRR11542155_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542155_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22954542
Total Bases678.8 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC21950109.562421241077255No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC16551267.210450986127277No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC13451065.859868604653493No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11673455.08546413167381No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG6592932.8721679569995344No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC4083541.7789681885179847No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG4050951.764770562618936No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3998971.742125806735765No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3329291.4503839806518466No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2504861.0912263028380178No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA2282970.9945613377953697No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT2263520.986088069193452No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2112040.9200967721333756No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2025910.8825747862884826No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2014010.8773906270924509No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG1861070.8107632903326932No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1819780.7927755648533523No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG1678930.7314151595793111No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1661270.7237216930749478No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1652210.7197747617878849No Hit
CCCCCGCGGGGGCGCGCCGGC1137650.4956099755769468No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1109490.48334225095843775No Hit
ATTGATCATCGACACTTCGAACGCA989320.43099095595111414No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC972320.4235850142424972No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG949190.41350857708247896No Hit
AACGATGCCGACCGGCGATGCGGCGGCG900980.39250619768410105No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC882090.3842768895149378No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC839590.3657620352433954No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC789860.34409747752754116No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG747430.32561311831009304No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG737470.3212741077561033No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC734390.3199323253759539No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT688590.29997984712568No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC679360.29595885642153086No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT676650.29477826218445136No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT667380.2907398457351055No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC625220.2723731102977354No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC565220.24623449250261667No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTT564470.24590775978017768No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC561630.24467053187120874No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG534780.23297350040789316No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG533850.23256835183206878No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC526580.22940122264256024No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC508620.22157706304922137No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT496070.2161097354937424No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG488110.21264201219958995No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA485910.21168359621376895No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA477730.2081200313210344No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC471530.2054190408155388No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC471430.20537547645254695No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT464500.20235646609721075No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG455710.19852715859022585No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA452220.19700676232180975No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA403390.1757342838728823No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC391920.17073745143771546No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC388980.16945665916575464No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG384820.16764438166529308No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT368980.16074378656738172No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT362600.1579643802085008No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTT342100.14903368579516854No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG334640.14578378431597547No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC330830.14412398208598542No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG318880.13891804070845762No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC316870.13804239701232113No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC316450.1378594266877553No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG311830.13584675311753117No Hit
AGGGCGCACCACCGGCCCGTCTCGC306420.13348992107967128No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT302570.1318126931044845No Hit
CCCCGCGGGGGCGCGCCGGC297970.12980873240685872No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCG294820.12843645497261502No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG293120.12769586080175332No Hit
CGACTGCATAATTTGTGGTAGTGGGGG287740.12535209807279102No Hit
TCGACTGCATAATTTGTGGTAGTGGGG287430.12521704854751622No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA285530.12438932565067079No Hit
CCCCCGCGGGGGCGCGCCGG272040.11851249308306826No Hit
TCGCTTCTGGCGCCAAGCGCCCGG269660.11747566124386188No Hit
CTGCATAATTTGTGGTAGTGGGG268820.11710972059473022No Hit
TCGCGCCGTCGGGCCCGGGGG268500.11697031463315626No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG266750.11620793828079863No Hit
ATAAACGATGCCGACCGGCGATGCGGCGGCGTTA264510.11523209654978088No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG256360.11168160096594391No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC246610.10743407557423712No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC246100.1072118973229786No Hit
TTTTGGTGACTCTAGATAACCTC245330.10687645172794125No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTC244300.10642773878912505No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC242270.1055433822203902No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG232190.10115209443081026No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG231310.10076872803648183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)