FastQCFastQC Report
Wed 30 Aug 2023
SRR11542156_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11542156_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29135861
Total Bases828.4 Mbp
Sequences flagged as poor quality0
Sequence length18-37
%GC71

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC19188566.585890837411669No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC17757836.094836188297301No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12990574.458618882071136No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10802323.7075684840753462No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG8166192.8027968694661194No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG5108121.7532071559512177No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3419561.1736601846089256No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG3276691.1246243932863353No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC3174231.0894581079996228No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC3036401.0421521437104604No Hit
TCGCTTCTGGCGCCAAGCGCCCGG2604820.894025407383705No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG2591040.8892958406137371No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC2514610.863063562803241No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC2487080.8536147258527902No Hit
CCCCCGCGGGGGCGCGCCGGC2174560.7463517209942758No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC2082680.714816699599164No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT2035020.698458851104486No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG1937240.6648988337773852No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1919190.6587037191040965No Hit
CCGGCCGAGGTGGGATCCCGAGGCCT1717480.5894728836055334No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1711440.5873998369226158No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG1675320.5750027431830486No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT1655660.5682550448740814No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1645510.5647713654317612No Hit
GAGGGCGCACCACCGGCCCGTCTCGC1549690.5318840586176602No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1546730.5308681284551707No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1477620.5071482184789391No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA1377630.4728296857264661No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC1347080.46234432543455645No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC1335630.4584144604478996No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1162680.39905462206865966No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1151210.39511789268901304No Hit
AACGATGCCGACCGGCGATGCGGCGGCG1081440.37117145774411814No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGC1063540.3650278260182529No Hit
CGCTTCTGGCGCCAAGCGCCCGGCC1028670.3530597568405478No Hit
CGCTTCTGGCGCCAAGCGCCCGGCCG1007090.34565307680456053No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG978210.3357408933272986No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCT972030.3336197958934524No Hit
CGCTTCTGGCGCCAAGCGCCCGG962990.3305170902620657No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC925380.31760859924475887No Hit
ATTGATCATCGACACTTCGAACGCA921330.3162185596643257No Hit
CGCTTCTGGCGCCAAGCGCCCGGC818160.28080858842647555No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG804350.27606872506702307No Hit
TCGCTTCTGGCGCCAAGCGCCCG776930.2666576422780161No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC769700.26417616421220574No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG737800.25322745739348496No Hit
CCCCCGCGGGGGCGCGCCGG719890.24708039347112482No Hit
CCGGCCGAGGTGGGATCCCGAGGC694550.23838320755305634No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCC693130.23789583565078104No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG682570.23427143615216997No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT675440.2318242800513086No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT674330.23144330624037504No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC669530.2297958519228246No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC654150.22451713371367332No Hit
CTCGCTTCTGGCGCCAAGCGCCCG642330.22046027745670532No Hit
GAGGGCGCACCACCGGCCCGTCTCG625710.21475596688218687No Hit
GCCGGCCGAGGTGGGATCCCGAGGCC621510.21331444435433022No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCGC618550.21229851419184076No Hit
AGGGCGCACCACCGGCCCGTCTCGC612970.21038334854768836No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCT596690.2047957326539964No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC593420.20367340440016513No Hit
CCGGCCGAGGTGGGATCCCGAGGCC582780.20002154732959498No Hit
CGGCCGAGGTGGGATCCCGAGGCCT577700.1982779915101874No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC555740.19074088800739405No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG555620.19069970164945527No Hit
CCGGCCGAGGTGGGATCCCGAGGCCTC553150.18985194911521577No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT545290.1871542426702269No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG540870.18563721181948253No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGG523460.17966175772186724No Hit
CCCCGCGGGGGCGCGCCGGC519990.17847078553813803No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCG519100.17816532005009222No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT504580.17318177073950208No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC503870.17293808478836442No Hit
GTCCGCCCGGAGGATTCAACCCGGCGGCGGG498550.17111215625307932No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGG494610.16975987083409No Hit
CCGCCGAGGGCGCACCACCGGCCCGT468040.16064052474714924No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG453080.15550595879078363No Hit
CGGCCGAGGTGGGATCCCGAGGCCTC449400.15424291048066163No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCT442750.15196049981155527No Hit
CCCCCCGCGGGGGCGCGCCGGC432310.148377286670883No Hit
ACGATGCCGACCGGCGATGCGGCGGCG430040.14759817806654144No Hit
TAACTGTGGTAATTCTAGAGCT421590.14469797202835366No Hit
ATGCGTGCATTTATCAGA411810.1413412838563446No Hit
TAAGTGGGAGGCCCCCGGCGCCCCCCCGG409270.1404695059466408No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC404670.13889069555898828No Hit
AACTGTGGTAATTCTAGAGCT404610.1388701023800189No Hit
CTGCATAATTTGTGGTAGTGGGG403780.13858523007094248No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG402360.13809785816866713No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTT399610.1371540041325705No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCTT398720.1368485386445247No Hit
CCGAGGGCGCACCACCGGCCCGTCTCGC374460.12852202994790507No Hit
CCGCCGAGGGCGCACCACCGGCCCGTC363570.1247843679649625No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC361870.12420089456083004No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTTA353960.12148602713336668No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGG349310.11989005576323968No Hit
TTGGTGACTCTAGATAACCTCG347730.11934776871704597No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCG346150.11880548167085228No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA343720.11797145792259237No Hit
GCCGAGGGCGCACCACCGGCCCGTCTCGC343050.11774150075743428No Hit
TCGACTGCATAATTTGTGGTAGTGGGG338190.11607345326091444No Hit
TTTGGTGACTCTAGATAACCTCG333340.1144088379608895No Hit
TAAACGATGCCGACCGGCGATGCGGCGGCGTT321120.11021469384412563No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG318050.10916100952019232No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC315960.10844368045275889No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCTC315880.10841622288079972No Hit
CGACTGCATAATTTGTGGTAGTGGGGG314250.10785677485213153No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG313960.10775724115377953No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT312040.10709825942675935No Hit
CGGCCGAGGTGGGATCCCGAGGC311990.10708109844428486No Hit
CTGCATAATTTGTGGTAGTGGG309540.10624021030303514No Hit
ACTGCATAATTTGTGGTAGTGGGG307110.10540618655477524No Hit
CGCTTCTGGCGCCAAGCGCCCG301340.10342580917721979No Hit
ATTGATCATCGACACTTCGAACG298620.10249225173060786No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT298020.10228631994091406No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTA297650.10215932867060286No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC296590.10179551584214382No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT294030.10091687353945024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)