FastQCFastQC Report
Tue 25 Jul 2023
SRR11549050_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549050_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83845065
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG11837191.4117932880128365No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA7667760.914515362353169No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG7388710.8812337374894992No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4267230.5089422973194666No Hit
GAGCGCCGAAGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGT4147720.4946886259793584No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA4144320.49428311612615483No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA3926710.4683292928450828No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG3749320.4471724125922021No Hit
GGGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCGG3545540.4228680602728378No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA3480940.41516337306196854No Hit
GCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC3457100.41232003338538764No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA3365900.4014428279112193No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG3226650.38483481407045245No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA3114990.37151739342082923No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA3039860.36255681834106757No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG2971190.3543667119823928No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA2500450.2982226801303094No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC2468440.29440492413000097No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2365420.28211797557793056No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA2349120.28017391363463073No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA2320980.2768177232613511No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2132090.2542892655638111No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA2086140.2488089191653677No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1984950.23674023032840397No Hit
CCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1953890.23303577855178478No Hit
CAGCGCCGAAGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGT1818470.2168845596338914No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGC1809010.2157562881011542No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1751970.20895326397564365No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG1737080.20717736935381947No Hit
CCTACTTGGATAACTGTGGTAATTCTAGAGCTAAAAAAAAAAAAAAAGAT1587930.18938860623460665No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1583880.1889055724388788No Hit
GCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1581290.1885966693448207No Hit
GCTACTTGGATAACTGTGGTAATTCTAGAGCTAAAAAAAAAAAAAAAGAT1564850.1866359099369772No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1492700.1780307523167881No Hit
CTACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGC1447130.17259572760782046No Hit
GCGGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCC1422840.16969871750949206No Hit
AATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG1240030.1478954068435632No Hit
GGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC1197830.14286231395968266No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA1191630.14212285481560544No Hit
GTACTTGGATAACTGTGGTAATTCTAGAGCTAAAAAAAAAAAAAAAGATC1179670.14069641427315965No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAAAAAAAAAAAAAAAGATC1149320.13707664249529775No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1135290.13540331801281327No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA1104050.13167739806749507No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC1094980.13059564090027243No Hit
CCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA1066750.12722871644264333No Hit
GCGGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCG1049470.12516777224753775No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGG1049410.12516061619130475No Hit
CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAAAAAAAAA1035480.12349921846920865No Hit
GCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAACGGGAAAAAAA1026430.12241984665406365No Hit
TCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1025980.12236617623231612No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1006640.12005954077321068No Hit
GAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACG963210.11487974873655356No Hit
ACTACTTGGATAACTGTGGTAATTCTAGAGCTAAAAAAAAAAAAAAAAAA940740.112199805677293No Hit
CCGGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCC938580.11194218765290478No Hit
CCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCT926030.1104453792241678No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA920800.10982160965585751No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA899740.10730983391807258No Hit
GCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCG884530.10549577366300569No Hit
CTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTC856520.10215508807823097No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)