FastQCFastQC Report
Tue 25 Jul 2023
SRR11549051_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549051_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77069468
Total Bases7.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA10212681.3251265728212889No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA5769330.7485882736338598No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA4866230.6314082770105536No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG4599330.5967771828916737No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG4570980.5930986833852285No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG4562430.5919892946451895No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA4292090.5569118499689137No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG3212670.4168537922176912No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG3117160.40446107659650643No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA3037500.3941249471191367No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2924280.3794343046457775No Hit
GAGCGCCGAAGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGT2674330.34700252504662416No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA2343040.3040166308141637No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG2259250.29314462116178097No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA2070510.2686550269167552No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG1741630.22598183758060975No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1737460.22544076728283632No Hit
GGGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCGG1729540.22441312297627383No Hit
CAGCGCCGAAGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGT1693290.21970957422464626No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1657090.21501251312646924No Hit
GAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATAAAA1598700.20743623142695108No Hit
GCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC1521310.197394641416235No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1520210.19725191304032358No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA1507720.1956312972083835No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1442150.18712338847337054No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1436960.1864499700452065No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1434180.18608925651335753No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1389380.18027631902169092No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC1256840.16307884725505048No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC1227770.1593069255389177No Hit
GGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC1160090.1505252378282928No Hit
GAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCAAAAAAAA1150690.14930555897959488No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1095290.14211723895641787No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGC1074930.1394754664713658No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGG1063560.13800017407671739No Hit
CCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCT1049880.1362251520926549No Hit
CTACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGC1027400.13330830310130076No Hit
GAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAG1017650.1320432106784492No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1014360.13161632308140495No Hit
GAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTAAAAAA1001240.1299139628159883No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA951760.12349378096135294No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG938400.12176027995937379No Hit
AATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG932670.12101679487394412No Hit
CAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCAAAAAAAA867650.1125802503268869No Hit
GCGGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCC851730.1105145814682411No Hit
TGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG807130.10472759459037657No Hit
CGTAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAAAAAAAAA777450.10087652350214743No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)