FastQCFastQC Report
Thu 24 Aug 2023
SRR11549052_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549052_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89673311
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG15076551.6812750451469336No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA12528171.3970901553975184No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG10093641.1256013508857725No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA7705690.8593069570053011No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA7357830.8205150359620378No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA7055000.7867446759047405No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA6032990.6727743107422453No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG5687530.6342500278594598No Hit
GAGCGCCGAAGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGT5111120.5699711478256893No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4879170.544105034774505No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA4502840.5021382560525729No Hit
GGGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCGG4367870.48708695500269866No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG4263860.4754881862229889No Hit
GCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC4179480.4660784745641878No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA4091460.4562628450286619No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA3965910.4422620237586633No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG3896120.4344793290837672No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC3481550.388248182338221No Hit
CAGCGCCGAAGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGT3301840.36820765991343846No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA3231560.3603703224474448No Hit
CCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA3179510.35456591984208097No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA2644480.2949015677585497No Hit
AATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG2426220.2705621073810914No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2376320.26499746396115564No Hit
GCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA2292150.2556111706413963No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA2240630.24986587146313802No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA2188110.24400905638468062No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG2054150.22907038639400748No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1918550.21394883032700776No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1868960.20841875683613378No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1788090.19940046598703154No Hit
GGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC1756760.19590667283379332No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA1619110.18055650917138544No Hit
GGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC1555120.17342060671764423No Hit
CCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAA1503220.1676329314973103No Hit
GCGGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCG1456990.1624775514311053No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCG1429640.15942759156065955No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1334030.1487655563426224No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGC1317520.14692442883033505No Hit
GCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAA1308850.14595758597560873No Hit
TCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1302550.1452550358043543No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1300640.145042040434974No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1270690.1417021392240106No Hit
CTACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGC1266510.1412360027611783No Hit
GCGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1247430.13910827938537923No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG1233110.13751137169452793No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1228720.13702181689265383No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1224100.13650661343373394No Hit
GCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCG1209880.13492085733290254No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCGG1165300.1299494785020261No Hit
CGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGA1126550.12562823736931047No Hit
CTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAA1123450.12528253807869322No Hit
CCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA1118130.12468927348963393No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1111390.12393765632229192No Hit
GCGGGGGGGCCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCC1107120.12346148342844171No Hit
CCCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1099780.12264295672098023No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1037230.11566763716352572No Hit
AATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA1027490.11458147229558635No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA1008240.11243479121675344No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1008190.11242921542174349No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1006840.11227866895647469No Hit
GGGCCGCCGGTGAAATACCACTACTCTCATCGTTTTTTCACTGACCCGGT1005080.11208240097212425No Hit
CCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCT971910.10838341856251968No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA971170.10830089679637234No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT967940.1079407004387292No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC950460.1059914025032487No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGG933890.10414358403694941No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT912310.10173707091065255No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)