FastQCFastQC Report
Tue 25 Jul 2023
SRR11549053_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549053_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66836672
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA44880056.714884008587381No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA37823355.659071415165615No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA29434244.403905688182679No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA20549973.0746548840732224No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA7240971.083382787221961No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA6934601.0375441793391509No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA5893500.8817763996388092No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA5616090.8402707423852582No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA4566950.6833000302588375No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA3927520.5876294977703258No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAG3911830.5852819841179405No Hit
ACAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA3818690.5713465206645837No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA3471100.5193406398212048No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA3124170.46743350716205617No Hit
ACCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA2309170.34549446148365975No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAAA2102200.3145279286197853No Hit
GCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAA2094670.3134013016087934No Hit
ACCAGTGCTCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1896700.28378133489351476No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA1849170.27666996944431943No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAAA1677650.2510074110213028No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1612080.24119692853647767No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1554390.2325654395239787No Hit
GAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA1501240.22461321832421577No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA1498160.2241523934644741No Hit
TCCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1314540.19667945166390094No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAG1227980.18372847768362854No Hit
TCCAGTGCTCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1197880.17922496200888038No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAA1115080.16683655344179915No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1059200.15847587384362885No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA984050.147232046502854No Hit
CCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAA978510.14640316022916283No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGAGAAAAAAA974990.14587650324660092No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTAAAAAAAAAAA933670.13969426843993668No Hit
GCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCAAAAAAAAAAAAA926770.13866190105934656No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAGA920560.13773277041681548No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA902940.13509649313478686No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG885300.13245722348353908No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG883240.13214900945397162No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA877840.13134106976481413No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAG850210.12720711168862509No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAAAG829840.12415938363896993No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGAAAAAAAAAAAAAAAG799490.11961846334898303No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAA795410.11900802002828625No Hit
GGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAG772000.11550545185732768No Hit
AAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA750450.11228117402374553No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA723230.10820855951654805No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA720890.10785845231791313No Hit
CACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAAA718750.10753826881146926No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGAAAAAAAAAAAAAAAGA698660.10453243393088155No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAAA677150.10131414083573761No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)