FastQCFastQC Report
Tue 18 Jul 2023
SRR11549054_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549054_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68927604
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA65660889.526064477738121No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA46769876.785361348118238No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA46070406.683882410884324No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA25876963.7542230540902013No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA14788702.145540993997122No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA9839991.427583352527385No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA9474111.3745015712427782No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA6625130.9611722467532746No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA5471290.7937734205877808No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA5341880.7749986493074676No Hit
ACAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA4467480.6481409102802993No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA3472140.5037372255098262No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAAA3214600.46637338503743725No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAG3049720.4424526347963582No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAAA2915380.4229626203168182No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA2909660.4221327641100074No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA2892090.4195837127894363No Hit
ACCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA2741610.3977521110410279No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA2266330.3287986044023814No Hit
ACCAGTGCTCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1957950.2840589091128135No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1838190.2666841574821025No Hit
TCCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1621750.23528309499921105No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1619440.23494796076184515No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA1566730.22730080680013193No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGAGAAAAAAA1539890.22340686613740413No Hit
GCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAA1494090.21676221329265996No Hit
GAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA1379250.20010125406361143No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG1360480.1973781070353178No Hit
TCCAGTGCTCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1244440.18054305209854676No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTAAAAAAAAAAA1229270.1783421921934208No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAA1198060.17381425299507No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAG1179910.1711810554157664No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA1164820.16899180189115526No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG1123030.16292891886971728No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA1110720.16114298706799673No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1068430.15500756416834102No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGAGAAAAAAA1055790.1531737560469968No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG987900.14332429138259323No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGAAAAAAAAAAAAAAAG868770.12604093999843663No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAGAAA835340.12119092374079912No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA822820.11937452519022713No Hit
CCCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA822290.11929763291931633No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAGAAA761370.11045937415726796No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAG760500.11033315476916912No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA754190.10941770150606134No Hit
GGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATCGGA736390.10683528184151012No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAGA732750.10630719152808503No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAAA726110.10534386194535356No Hit
GCGAGGTGCGTGGCGGGGGCGGGCGGGCGTCCCGCGCAAAAAAAAAAAAA714860.1037117146854546No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAGA706070.10243646362638689No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTAAAAAAAAAAA704210.10216661527941694No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)