FastQCFastQC Report
Tue 18 Jul 2023
SRR11549055_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549055_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75199368
Total Bases3.8 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA760194610.109055703766021No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA57335277.624435088337444No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA51191056.807377689663562No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA30123184.005775686838219No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA16955342.2547184173143586No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA13777461.8321244401947632No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA12830851.7062443929050042No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA11830601.5732313069439625No Hit
ACAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA6232720.8288261146024526No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA5825460.7746687445564702No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA5187200.689793031239305No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAAA3802930.5057130267371396No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAAA3403210.4525583246923033No Hit
GCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAA3233380.42997435829513886No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA3219150.4280820551576976No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA3093680.4113970745073283No Hit
ACCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA2986880.39719482748844376No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA2667060.3546652147395707No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA2665300.3544311702194093No Hit
GAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA2288660.3043456429048712No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA2050450.2726685149800727No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA2033070.27035732534347895No Hit
ACCAGTGCTCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1977810.2630088593297752No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA1914670.25461251216898523No Hit
TCCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1893740.2518292440968387No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGAGAAAAAAA1737260.23102055857703485No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAG1660720.22084228154683427No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG1597880.21248582833834456No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1509990.20079823011278497No Hit
GCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCAAAAAAAAAAAAA1438450.19128485228758837No Hit
CCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAA1378410.18330074263390086No Hit
TCCAGTGCTCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA1330280.17690042288653277No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA1316080.17501210914432153No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA1314390.1747873732130302No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGAGAAAAAAA1287790.17125010944240912No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG1269390.16880328036799458No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG1264710.16818093471211087No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGAAAAAAAA1258480.16735247030267594No Hit
AAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAA1077840.14333099182429299No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA1066360.1418043832496039No Hit
CACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAAA1003060.1333867593142538No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAAAG962460.1279877777696217No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAGAAA940510.1250688702596543No Hit
CCCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA938760.12483615553790293No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA920990.12247310376331887No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAGAAA898200.11944249318691083No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAGA864640.11497968972292427No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAGAA805200.10707536797383721No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAGAT783870.10423890796529035No Hit
GCCAGTGAGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA774150.10294634391076266No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAG761610.10127877670461274No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAGA759100.10094499730370074No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)