FastQCFastQC Report
Tue 25 Jul 2023
SRR11549056_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549056_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66350730
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA7483691.1278986681834549No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA5531480.8336728171641818No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA5333020.8037620686313474No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA4797980.7231239204150429No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA4347630.6552497613816759No Hit
ACCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA3223290.4857957101602349No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAA3118110.46994358615195336No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAAAG3014500.4543280835041303No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAG2985940.4500236847431822No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAA2779940.41897655082317853No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCGCAAAAAAAAAAAAA2282750.34404293667906893No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA2235330.33689606730777494No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTAAAAAAAAAAA2136060.3219346644716644No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAAA1805740.272150735945181No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1646360.24812990000260735No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAG1634350.2463198219522227No Hit
GCACCGCCCGTGCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1561000.23526493227730877No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAAAAAAAAAAAA1426100.21493358098697632No Hit
GCACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGAAAAAAAAAAAA1395450.21031418945955832No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCGAAAAAAAAAAAAAA1250040.18839883148233635No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA1244370.18754428172832463No Hit
GCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAA1217250.18345691147633192No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCGCGAAAAAAAAAAAA1200100.18087216222037045No Hit
CCGGGGGGCGGGTCGGGGGTCGGCGCGCGGCGCGGGAAAAAAAAAAAAAA1181640.17808997730695653No Hit
GGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATCGGA1164840.1755579780358106No Hit
GCGGTGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAAAGATCGGAAG1159360.17473206398784158No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTAAAAAAAAAAAA1122940.1692430512821788No Hit
GGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATCGG1086870.16380678856133157No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAAAA1032330.15558683378464713No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAAAGA1013970.15281972029546623No Hit
CCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCTAAAAAAAAAAA986970.14875043575255312No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCAAAAAAAAAAAAAAA979900.14768488605927924No Hit
GCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCAAAAAAAAAAAAA960990.14483487973681677No Hit
CCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAG939540.14160205923883581No Hit
GCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGATCGGAAGAG877040.13218241909320366No Hit
GGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAG836740.12610863512730003No Hit
GAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACAAAAAAAAAAAAAAAGA834510.12577254236690388No Hit
CCGGTGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAAAGATCGGAAG827490.12471452838574647No Hit
CCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA823970.12418401425274446No Hit
GCACCGCCCGTGCCCGCCCCTTGCCTCTCGGCGCCCAAAAAAAAAAAAAA822320.12393533575289978No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGAAAAAAAAAAAAAAAG821480.12380873578934248No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAAA816080.12299487888075987No Hit
TCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAA812020.1223829790568996No Hit
GCGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGAGAAAAAAAAAAAAAAA793430.11958120129198277No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCGCAAAAAAAAAAAAAA789720.11902205145293805No Hit
GGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAAAGATC781160.11773193753859226No Hit
CGGGGGCGGGCGGGCGTCCCGCGCGTGTGGGGGGAAAAAAAAAAAAAAGA735980.11092266807011769No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA735570.11086087523076234No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA716760.10802594033253289No Hit
GGGCCCGGTGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAAAGATCG712540.10738992622989979No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGAAAAAA694620.10468912700734416No Hit
GGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAAAA690470.10406366290167418No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)