FastQCFastQC Report
Tue 18 Jul 2023
SRR11549057_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549057_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87433008
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10332431.1817539206703263No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7198010.8232600209751448No Hit
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4869050.5568892242618486No Hit
TGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2125330.2430809654861697No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1966180.22487845780165772No Hit
GGGTCCGTCCGGTCTTCTAATGAACTAGCGAACGAAAAAAAAAAAAAAAG1950530.22308851595269374No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1316680.1505930117376266No Hit
TTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA967760.11068588650181177No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)