FastQCFastQC Report
Thu 24 Aug 2023
SRR11549058_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549058_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80188807
Total Bases8 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG18589342.3181963537629384No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC16950042.113766326514871No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC15796141.9698684381225424No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG7259170.9052597577614542No Hit
GCAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTT5435310.6778140495343696No Hit
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG5335740.6653971046108716No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA4832750.602671392779294No Hit
GCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG4727690.5895698136524216No Hit
CCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTG4681750.5838408345444022No Hit
GCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTG4430610.5525222491463179No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG4035100.5031999041961056No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCCCAAAGATTAAGCC3994150.49809320644962335No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC3990740.4976679600682923No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCCCAAAGATTAAGCC3679040.45879719846686334No Hit
GCAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATA3457770.43120357184014474No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG3418010.42624527385723543No Hit
CCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAA3332830.41562284372181774No Hit
GAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT3316590.41359762341893924No Hit
CTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC3219970.401548560262282No Hit
GAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC2954710.3684691306107098No Hit
CAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTA2671560.33315871627819577No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2402020.2995455463004955No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAA2397810.29902053537222467No Hit
GGACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2392690.2983820422718098No Hit
CCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGA2368240.29533298830596144No Hit
GGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCT2297270.2864826259355623No Hit
GGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG2292550.28589401510861734No Hit
CCAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTT2287620.2852792160881007No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG2242140.27960760159457165No Hit
GAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATC2234080.2786024737841529No Hit
GGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGC2176650.2714406263707103No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA2175050.27124109727683066No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA2158570.2691859476098703No Hit
GCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGA2134860.2662291758499412No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG2113940.26362033294746484No Hit
GGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCAAAA2100940.26199915905969273No Hit
GGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATG2059540.2568363437555568No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAA1884990.23506896667012395No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1853890.23119061990783826No Hit
GAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAAT1803450.22490046522328236No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1750950.2183534168303564No Hit
CCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG1749090.21812146425872128No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA1738970.21685944273993255No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1561620.19474288974021026No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA1482870.1849223171508213No Hit
CAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT1452130.18108886443465858No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1431760.1785486096582033No Hit
GCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTT1403940.1750792975383709No Hit
GAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC1354020.16885398980932587No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1342720.16744481558380087No Hit
CAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC1339750.16707443970328678No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC1335950.1666005581053226No Hit
CCAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATA1332960.16622768811113503No Hit
CGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAG1327950.16560291263592436No Hit
GCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAGCAAAAA1318130.164378302822238No Hit
GGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTG1296090.16162978955404586No Hit
GAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTG1295280.1615287779502693No Hit
CCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA1275620.15907706420922313No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG1225440.15281933300242265No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1183270.14756049432185717No Hit
GGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGA1183250.14755800020818366No Hit
GCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGC1177260.14681101316297174No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1157380.1443318641715171No Hit
GGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGA1126110.14043231744300672No Hit
GGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGAAAAAAAAAA1107270.13808286236257386No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1091750.13614743015194128No Hit
GGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACT1050110.13095468548372344No Hit
GCCAGTTGACACAAAATAGACTACGAAAGTGGCTTTAACATATCTGAACA1009740.12592031703377257No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCAAAAAAAAAAAAAAAG998850.12456227213855421No Hit
CAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC995220.12410959050681473No Hit
GGGGCAGGAGATGCCGTGGACCCCGCCCTTCGGGGAGGGGCCCGGCGGAT990920.1235733560670132No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA988190.12323290955058104No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAA985460.1228924630341489No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG967720.1206801842057583No Hit
GCAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAG951120.11861006985675696No Hit
GAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTA941110.11736176596317238No Hit
CAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATC936830.11682802563704434No Hit
CCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTT911620.11368419535160312No Hit
ATACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC872430.10879697960838848No Hit
GCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG842920.10511691488314572No Hit
TGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG842900.10511442076947222No Hit
GGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT824600.10283230675822376No Hit
TTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC822000.10250807198066933No Hit
GAAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAA817280.10191946115372436No Hit
GGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTAAAAAAAAA812170.10128221511014623No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)