FastQCFastQC Report
Tue 25 Jul 2023
SRR11549059_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549059_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60173156
Total Bases6 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG17945312.98227834351916No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG11747061.952209387189198No Hit
GGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG10975621.8240060401684763No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA6144541.021143049236108No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA5902250.9808775860119419No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG5233010.8696585567158884No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA4581130.761324534814162No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG4458990.7410264470755032No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG4173470.69357671716604No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA3771240.6267312952639545No Hit
GCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG3639480.6048344879899602No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA3110820.5169780358537286No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG2995800.49786319999569245No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2891660.48055647937096735No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC2843580.4725662054355268No Hit
GCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG2834360.4710339607249452No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2716880.4515103046946715No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA2659570.44198612417803046No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG2652720.44084774280411687No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA2634080.4377500159705766No Hit
GGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGT2564650.42621164826388697No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA2496700.4149192374087874No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG2364810.3930008258167479No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC2320240.3855938684685244No Hit
CGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG2312650.3843325086688157No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2290690.38068304078981663No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA2193450.3645230108920995No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2159080.358811161575105No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC2138200.35534117572294194No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGC2087180.3468623118255589No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1933620.3213426266024671No Hit
CCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG1904230.3164583888536609No Hit
CCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTG1884420.3131662231577151No Hit
GCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG1882770.3128920145056045No Hit
GCCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTG1821800.3027595893424636No Hit
CCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA1734220.28820492646255746No Hit
GCAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTT1720370.28590323565544745No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1708720.28396715638448483No Hit
CCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG1683770.279820789190449No Hit
GAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT1530190.25429778022611943No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1319670.2193120799580464No Hit
GCAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATA1311960.21803077771091148No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1300820.21617945384151033No Hit
CGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG1279460.21262969819964236No Hit
GTGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTA1263980.21005712248165945No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCAAAA1255370.20862625187882783No Hit
GGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG1232630.20484715809155832No Hit
GCGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATT1228160.20410430192493145No Hit
CCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1166610.19387548826589718No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA1144660.19022768225751696No Hit
GTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC1107700.18408540845023985No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1092050.18148458093173642No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1080060.17949199805973282No Hit
CCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAG1074470.17856301238379452No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG952170.15823833471523416No Hit
GCGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA951880.15819014046728744No Hit
CCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGA944420.15695038498562383No Hit
GAGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAAT922120.1532444135055838No Hit
CGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGC921210.15309318327926827No Hit
CCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA920440.15296521924161663No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAAC919910.15287714009881748No Hit
GCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA896150.14892853550842505No Hit
GAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGC892700.1483551901449211No Hit
CAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTTA884470.14698747062560588No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGCAAAAAA880060.14625458568269212No Hit
GCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAA871360.14480875824429085No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC868800.14438331936586474No Hit
GGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACT850020.14126232634366062No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG844860.14040480110433295No Hit
GCGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGT832220.138304196642104No Hit
GCGCTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGA830260.13797847000080898No Hit
GCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCG813650.13521810290289576No Hit
GAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATATC812870.1350884769946253No Hit
GTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAA808900.13442871435894105No Hit
CGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG802430.13335348406854378No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA801780.1332454624783184No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT797400.1325175631472612No Hit
GCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAG779660.1295694046694177No Hit
GCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAG772630.1284011096243647No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGG772290.12834460602332376No Hit
GGGACAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATG760730.1264234835879308No Hit
CTGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTA739130.12283384305121041No Hit
CCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAA726990.12081633211992403No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG724960.12047897238429707No Hit
CCAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTT720990.11981920974861282No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAA720290.11970287880529319No Hit
CGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGA717890.11930402985676869No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC702590.11676136780992509No Hit
CCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG688450.11441148275486829No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA683910.11365699349390947No Hit
GAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC674930.11216463367818034No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT665290.110562590401607No Hit
GCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGAC663770.11030998606754149No Hit
GGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCT656220.10905527375030818No Hit
GCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCG650570.10811631685065679No Hit
GGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGC644330.10707930958449312No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG626580.10412948923603077No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG626360.10409292808241602No Hit
CTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAA626110.10405138131694472No Hit
GCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAA620380.1030991294523425No Hit
GCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGCCC617410.10260555387854346No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGCAAAAAAA614090.10205381283308458No Hit
GAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC609740.10133089911388393No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)