FastQCFastQC Report
Thu 24 Aug 2023
SRR11549061_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11549061_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47355652
Total Bases4.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG15071783.1826781732410736No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA13244352.79678337023002No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG9718512.0522386641408716No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA8002071.6897814013837251No Hit
GGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG7621371.6093897302902722No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG7336471.5492279569923355No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG6659591.4062925371611397No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA6071101.282022259982821No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG5055341.0675262163004322No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA4922161.0394028573400278No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4124750.8710153541967915No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA3830760.8089340634566703No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3443950.7272521556666562No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG3356430.7087707292046154No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3244780.6851938180473156No Hit
GCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG3021790.638105457823704No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA2889360.6101404748898822No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG2765400.5839640852162695No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG2232150.47135873031586595No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA2179320.4602027230033703No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG2140660.4520389667531132No Hit
GCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG1983350.41882012309744987No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA1968510.41568638945146397No Hit
CGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG1910000.4033309476976476No Hit
GGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGT1842100.388992638091014No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC1823060.3849719986961641No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC1785800.37710387769552833No Hit
CCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG1646400.3476670535546633No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1537150.32459694568242875No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGC1467170.3098194065620721No Hit
CCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1427410.3014233654728268No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA1404500.29658550578080944No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1350640.2852119953918067No Hit
CGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1348560.2847727658780836No Hit
GGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1271920.2685888476416712No Hit
CCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG1191890.2516890697651043No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1090800.2303420930620911No Hit
GCGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1063230.22452019032490567No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1040320.21968233063288833No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG1038160.21922620767632975No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1028780.21724545150386695No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1006680.21257863792055906No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA1001090.21139820860242828No Hit
GCGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATT926610.19567041332257448No Hit
CGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG896610.18933537225926061No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGG881550.1861551816454771No Hit
CGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGA854830.1805127717384189No Hit
CCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAG843780.17817936494676495No Hit
GGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG789080.1666284734079894No Hit
GTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC762050.16092060140994363No Hit
GTGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTA741580.15659799172440916No Hit
GGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACT719750.15198819351067114No Hit
GCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCG719520.15193962486251905No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGAAAAAAAAAAAAAAA709310.1497835992206379No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA699970.14781128976959287No Hit
CCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA666700.14078572923037783No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA657260.1387923029757884No Hit
CCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA641010.13536082239982675No Hit
CGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA634330.1339502199230622No Hit
GCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAA622710.1314964473512053No Hit
GGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA620870.1311078981659887No Hit
GCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA609700.12874915121008154No Hit
GCGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGT605340.1278284585755466No Hit
GCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAG597690.12621302310440158No Hit
CCTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAA594850.1256133058837412No Hit
CCGGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA590850.12476863374196602No Hit
GGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAAC583340.12318276179578312No Hit
GCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAA582600.1230264974495547No Hit
GTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAA564700.11924658961511077No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA560620.1183850240305001No Hit
GCAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTT540340.11410253627169994No Hit
TCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG527810.1114566007875892No Hit
GCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGAC526160.11110817352910694No Hit
GGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGA512710.1082679634523879No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG509300.10754788045152455No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA505200.106682091506205No Hit
CCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAA505070.10665463966159731No Hit
CGGCGGGGGACCGTCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCATTT500920.10577829231450556No Hit
CTCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAA475960.10050753814982846No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)