FastQCFastQC Report
Thu 7 Sept 2023
SRR11553468_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR11553468_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences225299338
Total Bases22.5 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC2446456610.85869413428991No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCT220200219.773673192062375No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG188655528.373549681712781No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC161915667.186690446467268No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC46182192.0498147224915506No Hit
CGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCT35351601.5690947125641355No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT25070881.1127808995160031No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA18129690.8046934429962684No Hit
AGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCT17491710.7763764490066988No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA10421850.46257792377534634No Hit
TACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTC10397970.4615180005544446No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA9635280.4276657040155173No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA8821060.3915262280974834No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGA8621540.3826704541848232No Hit
TCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGC8243660.3658981013073372No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8168670.3625696405730229No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGAC7068670.3137457066118854No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG6588160.2924180806958252No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC6081380.26992445046598407No Hit
CACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAAA5985990.26569052768366325No Hit
AGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCACTTGGAC5708910.2533922225727978No Hit
CCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG5629690.24987601161970568No Hit
CAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGA5272250.23401089620600662No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTG4906560.217779601287599No Hit
GTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCTC4818130.21385460085106864No Hit
TGGCAGGGGAGATACCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCT4509420.20015238571184793No Hit
CCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCG4352480.19318654189742893No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCG4041780.1793959998231331No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAAC3913390.1736973590219781No Hit
CTACTTGGATAACTGTGGTATTTCTAGAGCTAATACATGCCGACGGGCGC3877410.17210037252750385No Hit
TACTTGGATAACTGTGGTATTTCTAGAGCTAATACATGCCGACGGGCGCT3654250.16219532788862434No Hit
CAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC3542250.15722416370349035No Hit
CAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGC3081520.13677448089084043No Hit
CTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGG3003200.13329821679280743No Hit
AGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCG2412620.10708509050301782No Hit
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG2378850.10558619573041089No Hit
ACGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGG2367270.10507221286198364No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)