FastQCFastQC Report
Tue 27 Jun 2023
SRR1167750_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1167750_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2656902
Total Bases84.9 Mbp
Sequences flagged as poor quality0
Sequence length1-48
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTACACGGAGTCGACCCGCAACGCGA46781817.607649811697986No Hit
C254910.9594256769726546No Hit
ACACGGAGTCGACCCGCAACGCGA103430.38928797524334735No Hit
ACTGGACCCGGGTGCGATTCCCGGCGGCTC87360.3288039980398223No Hit
ACGGAGTCGACCCGCAACGCGA79170.297978623223589No Hit
TACACGGAGTCGACCCGCAACGCGA73950.27833168103302264No Hit
A69070.2599644247322634No Hit
AC62140.23388141527237363No Hit
TGTACACGGAGTCGACCCGCAACGCGA59940.22560109480891655No Hit
GTACACGGAGTCGACCCGCAACGCGA43020.16191790288087404No Hit
AGGCGCGGGAGAGTAGGTCGCCGCCAGGTCC39050.1469756882263629No Hit
ATGTACACGGAGTCGACCCGCAACGCG38550.14509379721194082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)